YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS24A, RPS24B
Organism:	Saccharomyces cerevisiae
Length:	135 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS24A, RPS24B.

Description	E-value	Query Range	Subject Range
RS24_ORYLA - 40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1	2.0E-44	[1..133]	[1..132]
rps2402 - 40S ribosomal protein S24 RS24B_SCHPO - 40S ribosomal protein S24-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps2402 PE=2 S...	7.0E-44	[1..132]	[1..132]
RS24_TAKRU - 40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1	1.0E-43	[1..133]	[1..132]
RS24_ICTPU - 40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1	1.0E-43	[1..132]	[1..131]
CE29465 - WBGene00004493 locus:rps-24 ribosomal protein status:Partially_confirmed TR:O44414 protein_id:AAK392...	2.0E-43	[1..131]	[1..131]
RPS24A, RPS24B - Protein component of the small (40S) ribosomal subunit; identical to Rps24Bp and has similarity to r... gi\|151943094, gi... - gi\|151944789\|gb\|EDN63048.1\| ribosomal protein S24A [Saccharomyces cerevisiae YJM789], gi\|151943094\|g... RS24A_YEAST, RS2... - 40S ribosomal protein S24-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS24B PE=1 ...	4.0E-42	[1..135]	[1..135]
RS24_SPOFR - 40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1	5.0E-42	[4..132]	[5..132]
gi\|108868633, gi... - gi\|17887416\|gb\|AAL40881.1\| ribosomal protein S24 [Aedes aegypti], gi\|157107877\|ref\|XP_001649979.1\| 4...	6.0E-42	[3..132]	[2..130]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDAVTIRTR KVISNPLLAR KQFVVDVLHP NRANVSKDEL REKLAEVYKA EKDAVSVFGF  60
   61 RTQFGGGKSV GFGLVYNSVA EAKKFEPTYR LVRYGLAEKV EKASRQQRKQ KKNRDKKIFG 120
  121 TGKRLAKKVA RRNAD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.920819
Match:	PF01282
Description:	Ribosomal protein S24e

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.49719655437057	bayes_pls_golite062009
structural molecule activity	8.91971353502188	bayes_pls_golite062009
RNA binding	3.61805230341974	bayes_pls_golite062009
nucleic acid binding	1.63806694539886	bayes_pls_golite062009
binding	1.63388911909805	bayes_pls_golite062009
protein binding	0.228118691402512	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: