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View Structure Prediction Details

Protein: MOT2
Organism: Saccharomyces cerevisiae
Length: 587 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MOT2.

Description E-value Query
Range
Subject
Range
gi|49527150, gi|... - gi|50290813|ref|XP_447839.1| unnamed protein product [Candida glabrata], gi|49527150|emb|CAG60788.1|...
gi|49527150 - gi|49527150|emb|CAG60788.1| unnamed protein product [Candida glabrata]
406.0 [0..1] [587..1]
gi|45187809, gi|... - gi|45187809|ref|NP_984032.1| ADL064Wp [Ashbya gossypii ATCC 10895], gi|44982570|gb|AAS51856.1| ADL06...
gi|44982570 - gi|44982570|gb|AAS51856.1| ADL064Wp [Ashbya gossypii ATCC 10895]
393.0 [0..1] [586..1]
gi|114616155 - gi|114616155|ref|XP_001145258.1| PREDICTED: CCR4-NOT transcription complex, subunit 4 isoform 3 [Pan...
368.0 [0..28] [463..9]
gi|109068348 - gi|109068348|ref|XP_001105055.1| PREDICTED: CCR4-NOT transcription complex, subunit 4 isoform 2 [Mac...
368.0 [0..28] [463..9]
gi|73978605 - gi|73978605|ref|XP_859417.1| PREDICTED: similar to CCR4-NOT transcription complex subunit 4 (E3 ubiq...
367.0 [0..28] [463..9]
gi|8885568 - gi|8885568|dbj|BAA97498.1| general negative transcription regulator-like [Arabidopsis thaliana]
366.0 [0..25] [485..1]
gi|6856207 - gi|6856207|gb|AAF29829.1|AF180475_1 Not4-Np [Homo sapiens]
363.0 [0..28] [455..9]

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Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNPHVQENL QAIHNALSNF DTSFLSEDEE DYCPLCIEPM DITDKNFFPC PCGYQICQFC  60
   61 YNNIRQNPEL NGRCPACRRK YDDENVRYVT L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 200.440336
Match: 1e4uA
Description: Not-4 N-terminal RING finger domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [92-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPEELKMERA KLARKEKERK HREKERKENE YTNRKHLSGT RVIQKNLVYV VGINPPVPYE  60
   61 EVAPTLKSEK YFGQYGKINK IVVNRKTPHS NNTTSEHYHH HSPGYGVYIT FGSKDDAARC 120
  121 IAQVDGTYMD GRLIKAAYGT TKYC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.154902
Match: 3sxlA
Description: Sex-lethal protein
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [236-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSYLRGLPCP NPNCMFLHEP GEEADSFNKR ELHNKQQAQQ QSGGTAFTRS GIHNNISTST  60
   61 AGSNTNLLSE NFTGTPSPAA MRAQLHHDSH TNAGTPVLTP APVPAGSNPW GVTQSATPVT 120
  121 SINLSKNSSS INLPTLNDSL GHHTTPTTEN TITSTTTTTN TNATSHSHGS KKKQSLAAEE 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [416-587]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKDPYDALGN AVDFLDARLH SLSNYQKRPI SIKSNIIDEE TYKKYPSLFS WDKIEASKKS  60
   61 DNTLANKLVE ILAIKPIDYT ASVVQFLQSV NVGVNDNITI TDNTKTPTQP IRLQTVSQQI 120
  121 QPPLNVSTPP PGIFGPQHKV PIQQQQMGDT SSRNSSDLLN QLINGRKIIA GN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle