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View Structure Prediction Details

Protein: RGI1
Organism: Saccharomyces cerevisiae
Length: 161 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGI1.

Description E-value Query
Range
Subject
Range
RGI2_YEAS7 - Respiratory growth induced protein 2 OS=Saccharomyces cerevisiae (strain YJM789) GN=RGI2 PE=3 SV=1
RGI2_YEAS2 - Respiratory growth induced protein 2 OS=Saccharomyces cerevisiae (strain JAY291) GN=RGI2 PE=3 SV=1
RGI2 - Putative protein of unknown function; expression induced under carbon limitation and repressed under...
RGI2_YEAST - Respiratory growth induced protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RGI...
250.0 [0..11] [158..13]
RGI1_CANGA - Respiratory growth induced protein 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NB...
gi|49527149 - gi|49527149|emb|CAG60787.1| unnamed protein product [Candida glabrata]
219.0 [0..1] [158..1]
gi|49641692 - gi|49641692|emb|CAH01410.1| KLLA0C08063p [Kluyveromyces lactis]
RGI1_KLULA - Respiratory growth induced protein 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 7079...
204.0 [0..1] [160..1]
gi|44982569, gi|... - gi|45187808|ref|NP_984031.1| ADL065Wp [Ashbya gossypii ATCC 10895], gi|44982569|gb|AAS51855.1| ADL06...
gi|44982569 - gi|44982569|gb|AAS51855.1| ADL065Wp [Ashbya gossypii ATCC 10895]
183.0 [0..13] [158..14]
orf19.8934, orf1... - orf19.1354 CGDID:CAL0003857 Assembly 19, Contig19-10111 (9426, 10031) CDS, translated using codon ta...
RGI1_CANAL - Respiratory growth induced protein 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RGI1 PE=...
RGI1_CANAW - Respiratory growth induced protein 1 OS=Candida albicans (strain WO-1) GN=RGI1 PE=3 SV=1
112.0 [0..21] [158..56]
RGI1_DEBHA - Respiratory growth induced protein 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 199...
gi|49654300 - gi|49654300|emb|CAG86772.1| DEHA2D03828p [Debaryomyces hansenii]
95.0 [0..22] [158..52]

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Predicted Domain #1
Region A:
Residues: [1-161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKDKKEVK VQTVTTEDGE TVKVFEDLQG FETFIANETE DDDFDHLHCK LNYYPPFVLH  60
   61 ESHEDPEKIS DAANSHSKKF VRHLHQHIEK HLLKDIKQAV RKPELKFHEK SKEETFDKIT 120
  121 WHYGEETEYH GRPFKIDVQV VCTHEDAMVF VDYKTHPVGA N

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.549 a.26.1 4-helical cytokines
View Download 0.549 a.26.1 4-helical cytokines
View Download 0.510 a.24.1 Apolipoprotein
View Download 0.510 a.24.1 Apolipoprotein
View Download 0.489 a.24.16 Nucleotidyltransferase substrate binding subunit/domain
View Download 0.466 a.92.1 Carbamoyl phosphate synthetase, large subunit connection domain
View Download 0.466 a.92.1 Carbamoyl phosphate synthetase, large subunit connection domain
View Download 0.464 a.24.1 Apolipoprotein
View Download 0.464 a.24.1 Apolipoprotein
View Download 0.422 a.63.1 Apolipophorin-III
View Download 0.381 a.73.1 Retrovirus capsid protein, N-terminal core domain
View Download 0.358 d.90.1 NADH oxidase/flavin reductase
View Download 0.350 d.90.1 NADH oxidase/flavin reductase
View Download 0.332 d.90.1 NADH oxidase/flavin reductase
View Download 0.265 a.73.1 Retrovirus capsid protein, N-terminal core domain


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