YRC Public Data Repository - Protein Structure Prediction

Protein:	ISD11
Organism:	Saccharomyces cerevisiae
Length:	94 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ISD11.

Description	E-value	Query Range	Subject Range
BCN92_DROSU - Protein bcn92 OS=Drosophila subobscura GN=bcn92 PE=3 SV=1	123.0	[0..7]	[87..2]
gi\|220952160 - gi\|220952160\|gb\|ACL88623.1\| bcn92-PA [synthetic construct] bcn92-PA - The gene bcn92 is referred to in FlyBase by the symbol Dmel\bcn92 (CG3717, FBgn0013432). It is a pro...	122.0	[0..7]	[87..2]
gi\|125980855, gi... - gi\|54642756\|gb\|EAL31501.1\| GA17638 [Drosophila pseudoobscura pseudoobscura], gi\|125980855\|ref\|XP_001... gi\|54642756\|gb\|E... - GA17638-PA [Drosophila pseudoobscura], GA17638 [Drosophila pseudoobscura pseudoobscura]	121.0	[0..7]	[87..2]
LYRM4 - LYR motif containing 4	116.0	[0..6]	[87..3]
gi\|50734067 - gi\|50734067\|ref\|XP_418962.1\| PREDICTED: similar to chromosome 6 open reading frame 149; CGI-203 prot...	116.0	[0..6]	[87..125]
gi\|16306961 - gi\|16306961\|gb\|AAH09552.1\| LYR motif containing 4 [Homo sapiens] gi\|190689721, gi... - gi\|190691085\|gb\|ACE87317.1\| LYR motif containing 4 protein [synthetic construct], gi\|190689721\|gb\|AC... gi\|55625814 - gi\|55625814\|ref\|XP_518217.1\| PREDICTED: hypothetical protein LOC57128 isoform 2 [Pan troglodytes]	115.0	[0..6]	[87..3]
LYRM4_MOUSE - LYR motif-containing protein 4 OS=Mus musculus GN=Lyrm4 PE=1 SV=1	114.0	[0..6]	[87..3]
LYRM4_BOVIN - LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1	114.0	[0..6]	[87..3]
gi\|39943160, gi\|... - gi\|39943160\|ref\|XP_361117.1\| hypothetical protein MG03660.4 [Magnaporthe grisea 70-15], gb\|EAA52065....	108.0	[0..4]	[87..7]
ISD11_SCHPO - Protein isd11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=isd11 PE=3 SV=1 isd11 - iron sulfur cluster assembly protein Isd11	107.0	[0..8]	[87..4]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGFTAPTRR QVLSLYKEFI KNANQFNNYN FREYFLSKTR TTFRKNMNQQ DPKVLMNLFK  60
   61 EAKNDLGVLK RQSVISQMYT FDRLVVEPLQ GRKH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	14.69897
Match:	PF05347.6
Description:	No description for PF05347.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.966	N/A	N/A	a.8.11	Description not found.
View	Download	0.962	N/A	N/A	a.8.11	Description not found.
View	Download	0.958	N/A	N/A	a.8.11	Description not found.
View	Download	0.945	N/A	N/A	a.8.11	Description not found.
View	Download	0.942	N/A	N/A	a.8.11	Description not found.
View	Download	0.859	N/A	N/A	a.64.1	Saposin
View	Download	0.841	N/A	N/A	a.64.1	Saposin
View	Download	0.835	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.819	N/A	N/A	a.8.3	Families 57/38 glycoside transferase middle domain
View	Download	0.818	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.737	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.690	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.604	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.544	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.497	N/A	N/A	d.150.1	4'-phosphopantetheinyl transferase

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits