YRC Public Data Repository - Protein Structure Prediction

Protein:	SPO73
Organism:	Saccharomyces cerevisiae
Length:	143 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPO73.

Description	E-value	Query Range	Subject Range
gi\|44982529 - gi\|44982529\|gb\|AAS51815.1\| ADL105Cp [Ashbya gossypii ATCC 10895] gi\|45187768, gi\|... - gi\|45187768\|ref\|NP_983991.1\| ADL105Cp [Ashbya gossypii ATCC 10895], gi\|44982529\|gb\|AAS51815.1\| ADL10...	133.0	[0..9]	[142..20]
gi\|50308275, gi\|... - gi\|50308275\|ref\|XP_454138.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643273\|emb\|CAG9922... gi\|49643273 - gi\|49643273\|emb\|CAG99225.1\| KLLA0E04291p [Kluyveromyces lactis]	102.0	[0..12]	[142..4]
gi\|50409823, gi\|... - gi\|50409823\|ref\|XP_456909.1\| hypothetical protein DEHA0A13761g [Debaryomyces hansenii CBS767], gi\|49...	81.0	[0..16]	[135..48]
gi\|46440754, gi\|... - gi\|68474123\|ref\|XP_718958.1\| hypothetical protein CaO19.13522 [Candida albicans SC5314], gi\|68473918... orf19.6103, orf1... - orf19.6103 CGDID:CAL0005937 Assembly 19, Contig19-10237 (184012, 183491) CDS, reverse complemented, ...	72.0	[0..16]	[135..62]
gi\|85091326 - gi\|85091326\|ref\|XP_958847.1\| hypothetical protein NCU04604 [Neurospora crassa OR74A] gi\|28920235, gi\|... - gi\|32406694\|ref\|XP_323960.1\| predicted protein [Neurospora crassa], gi\|28950044\|emb\|CAD70799.1\| cons...	53.0	[0..16]	[134..166]
gi\|57222853, gi\|... - gi\|58258607\|ref\|XP_566716.1\| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21], g...	52.0	[0..16]	[135..119]
gi\|134086399, gi... - gi\|50260991\|gb\|EAL23641.1\| hypothetical protein CNBA2880 [Cryptococcus neoformans var. neoformans B-...	52.0	[0..16]	[135..119]
gi\|49647788, gi\|... - gi\|50548901\|ref\|XP_501921.1\| YALI0C16841p [Yarrowia lipolytica], gi\|49647788\|emb\|CAG82241.1\| unnamed... gi\|49647788 - gi\|49647788\|emb\|CAG82241.1\| YALI0C16841p [Yarrowia lipolytica]	48.0	[0..16]	[120..1144]
gi\|119195153, gi... - gi\|90306966\|gb\|EAS36597.1\| hypothetical protein CIMG_01951 [Coccidioides immitis RS], gi\|119195153\|r...	47.0	[0..16]	[115..123]
gi\|70999818, gi\|... - gi\|70999818\|ref\|XP_754626.1\| pentatricopeptide repeat protein [Aspergillus fumigatus Af293], gi\|6685...	47.0	[0..16]	[120..151]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKNHFLKDF SALPEDVLIE NERGITLLGY PLFSPKILLP HVDPPQFQRL NTENGSLIAL  60
   61 SKNTISNFIE LYPIDLSTER TAGSSSSQMT KWFVLMDYKE KYDIDDQGWC YSWNFNNSRW 120
  121 KSKNGLVRRR VWVRLPTTSH GLD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.997
Match:	1aocA
Description:	Coagulogen
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits