| Protein: | SPC25 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 221 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPC25.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-55 | [1..221] | [1..221] |
|
|
1.0E-34 | [2..133] | [218..365] |
|
|
1.0E-34 | [2..156] | [393..546] |
|
|
2.0E-32 | [2..105] | [319..422] |
|
Region A: Residues: [1-151] |
1 11 21 31 41 51
| | | | | |
1 MASIDAFSDL ERRMDGFQKD VAQVLARQQN HARQQLQQFQ AEMRQLHNQH QHLIDELQRL 60
61 ATQRTALQQQ IHAAQQATNT TREQWRSYHE RESELSRRQS TLAAQSRELD SLLQQRGKEC 120
121 VQLRARWAAQ SGNDAAEVAL YERLLQLRVL P
|
| Detection Method: |  |
| Confidence: | 23.0 |
| Match: | 1gk4A_ |
| Description: | Vimentin coil |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [152-221] |
1 11 21 31 41 51
| | | | | |
1 GASDVHDVRF VFGDDSRCWI EVAMHGDHVI GNSHPALDPK SRATLEHVLT VQGDLAAFLV 60
61 VARDMLLASL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.629 | b.36.1 | PDZ domain-like |
| View | Download | 0.537 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.505 | d.93.1 | SH2 domain |
| View | Download | 0.497 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.490 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.474 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.416 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.409 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.395 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.394 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.394 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.389 | b.40.6 | MOP-like |
| View | Download | 0.384 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.383 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.381 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.375 | b.40.6 | MOP-like |
| View | Download | 0.367 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.363 | b.114.1 | N-utilization substance G protein NusG, insert domain |
| View | Download | 0.361 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.361 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.360 | d.95.1 | Glucose permease domain IIB |
| View | Download | 0.342 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.334 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.332 | b.55.1 | PH domain-like |
| View | Download | 0.329 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.313 | d.15.1 | Ubiquitin-like |
| View | Download | 0.298 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.287 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.284 | d.64.1 | eIF1-like |
| View | Download | 0.259 | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.257 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.246 | d.212.1 | TolA/TonB C-terminal domain |
| View | Download | 0.245 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.240 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.239 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.234 | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.233 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.229 | d.58.10 | Acylphosphatase-like |
| View | Download | 0.228 | b.15.1 | HSP20-like chaperones |
| View | Download | 0.222 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.220 | d.93.1 | SH2 domain |
| View | Download | 0.213 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.212 | b.36.1 | PDZ domain-like |
| View | Download | 0.212 | d.199.1 | DNA-binding C-terminal domain of the transcription factor MotA |
| View | Download | 0.211 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.208 | d.93.1 | SH2 domain |
| View | Download | 0.205 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.205 | b.1.2 | Fibronectin type III |
| View | Download | 0.204 | d.93.1 | SH2 domain |
