| Protein: | SEC3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1336 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1336] | [1..1336] |
|
|
2.0E-84 | [1..801] | [1108..1926] |
|
|
4.0E-84 | [1..801] | [324..1142] |
|
|
5.0E-84 | [1..801] | [1108..1926] |
|
|
1.0E-83 | [1..801] | [1108..1926] |
|
|
2.0E-83 | [1..801] | [1107..1925] |
|
|
4.0E-83 | [1..810] | [1112..1939] |
|
Region A: Residues: [1-160] |
1 11 21 31 41 51
| | | | | |
1 MRSSKSPFKR KSHSRETSHD ENTSFFHKRT ISGSSAHHSR NVSQGAVPSS APPVSGGNYS 60
61 HKRNVSRASN SSQTSNFLAE QYERDRKAII NCCFSRPDHK TGEPPNNYIT HVRIIEDSKF 120
121 PSSRPPPDSK LENKKKRLLI LSAKPNNAKL IQIHKARENS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [161-274] |
1 11 21 31 41 51
| | | | | |
1 DGSFQIGRTW QLTELVRVEK DLEISEGFIL TMSKKYYWET NSAKERTVFI KSLITLYIQT 60
61 FEGHVPELVN WDLSLFYLDE RSYQRAVITN RPGSVSPIKS PTSNFTTNTT QSVG
|
|
Region B: Residues: [308-340] |
1 11 21 31 41 51
| | | | | |
1 MKSLNKAPYS SNSTLNEVNK RYELEQQQQQ EEA
|
| Detection Method: | |
| Confidence: | 10.32 |
| Match: | 1lu7A |
| Description: | No description for 1lu7A was found. |
|
Region A: Residues: [275-307] |
1 11 21 31 41 51
| | | | | |
1 SVPFSAPTER TRRSETESVN PVSTPASVEY HAG
|
|
Region B: Residues: [341-382] |
1 11 21 31 41 51
| | | | | |
1 ELRRLEEQKR LQLQKENEMK RLEEERRIKQ EERKRQMELE HQ
|
| Detection Method: | |
| Confidence: | 10.32 |
| Match: | 1lu7A |
| Description: | No description for 1lu7A was found. |
|
Region A: Residues: [383-777] |
1 11 21 31 41 51
| | | | | |
1 RQLEEEERKR QMELEAKKQM ELKRQRQFEE EQRLKKEREL LEIQRKQREQ ETAERLKKEE 60
61 QEALAKKEEE EKSKRNKVDN ESYTQEINGK VDNLLEDLNA VLAEETETTP TMQNGTYVPE 120
121 RSTARAHDQL KKPLNIAKVE SLGGSDLNDS ISLSDEIAGL NTSNLSGEDQ DEKNDLSFEK 180
181 GDEVRYSNNF EGEAPHVYHE VSIIQEEAPA VSQKLILPEE NNESEALIES KEEIKTMENI 240
241 DDEVLLEILT DINWSIEDDA DSMIERIDLR LAETEYLFNQ NLLSLQKIGP NIRPYEDKVN 300
301 DECHRIIPTL SLFLMEMSNF SNDIENVESQ DNGLQVESAN KKLLWNTLDE LLKTVSLDEI 360
361 SLNQLLECPI REKNLPWMEN QLNLLLKAFQ AIGSD
|
| Detection Method: | |
| Confidence: | 18.09691 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [778-968] |
1 11 21 31 41 51
| | | | | |
1 GNEVEYNLRE ISGLKQRLQF YEKVTKIFLN RIVEEMQKKF SNIRGQDISH DQMIRILTTL 60
61 LIFSPLILFC KEISQKSYQA IVENWNVSIQ PVYMELWTKK ISQLQGIDTN DEKMNELSLS 120
121 QLLNEWDTFR KERKTNDINP VFKNSFSLLT ECLQTMRQEC IVYQNFVEVF FHISSKHNFE 180
181 EYIKHFNDPD A
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [969-1336] |
1 11 21 31 41 51
| | | | | |
1 PPILLDTVKV MQSDREAAVI ETQLVSRIFQ PIVTRLSSYF VELVKAEPTV APALTFYLEN 60
61 EIKSLESSNH EFLLSAVTRM YTQIKQVWSD NVEEQVLHFE RISNATTNGE ILPGILDLPV 120
121 GLKNSEDLFQ FAKRSMDIKD TDEGYESIEL MNSSFRKLSI AATRSITHKE VNSSINPNLS 180
181 DTAALNNDYM ETISLLVNSN WLTEMLSMLN FNKDGIFDTS LQNVKKVFDV EKESYASFLL 240
241 RDTMPKLTAF VYGVSNIIEN TNNVNMTNPS RWAAYSRQNL ENILLAYTSH EIETLVKRLH 300
301 THMVNDFGYH QENAINNVLC DKLWSCIQGQ TVSLYLKLYT VIDKHYRGTN IRFTKNDIIS 360
361 AFEEYKNA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
