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View Structure Prediction Details

Protein: NOP16
Organism: Saccharomyces cerevisiae
Length: 231 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP16.

Description E-value Query
Range
Subject
Range
NOP16_YEAST - Nucleolar protein 16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP16 PE=1 SV=1
NOP16 - Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis
1.0E-81 [1..231] [1..231]
NOP16_SCHPO - Nucleolar protein 16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop16 PE=3 SV=1
SPBC1539.10 - ribosome biogenesis protein Nop16
9.0E-73 [1..223] [1..206]
gi|20260268, gi|... - gi|30102920|gb|AAP21378.1| At1g02870 [Arabidopsis thaliana], gi|21593889|gb|AAM65856.1| unknown [Ara...
0.003 [40..223] [48..182]

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Predicted Domain #1
Region A:
Residues: [1-231]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSVRKRKMN RSSVGKATRR NKDKQRKINI QSNPIIAANW DYSLTMAQNY KKLGLRAKLQ  60
   61 TPAGGKEADL SKVVKRIPLT KPVLDEDEDE DEGEDEQNDY NAATVELDEN EIPEGGARIQ 120
  121 RDKNGDVVRV VYGKKKNFDA DEDVNEIKAR DTTEETEVVK KLEELASRPV IRKERSQSER 180
  181 EEEWLEKLYK KHGDDYKKMF FDKKLNIYQQ SEGDLKRRLL RWKKRNGIAS K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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