| Protein: | AVT2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 480 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AVT2.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-68 | [18..479] | [17..509] |
|
|
5.0E-68 | [36..479] | [6..477] |
|
|
6.0E-67 | [46..479] | [38..505] |
|
|
1.0E-66 | [38..479] | [3..471] |
|
|
1.0E-65 | [32..479] | [8..489] |
|
Region A: Residues: [1-480] |
1 11 21 31 41 51
| | | | | |
1 MSELGEYSKL ENKELRTEFE LTNFPFPGTT DNDSDDGSQG QNSLNIITPD MDDTLVNDVL 60
61 RENDKKSSMR MAFMNLANSI LGAGIITQPF AIKNAGILGG LLSYVALGFI VDWTLRLIVI 120
121 NLTLAGKRTY QGTVEHVMGK KGKLLILFTN GLFAFGGCIG YCIIIGDTIP HVLRAIFSQN 180
181 DGNVHFWLRR NVIIVMVTTF ISFPLSMKRN IEALSKASFL AVISMIIIVL TVVIRGPMLP 240
241 YDWKGHSLKL SDFFMKATIF RSLSVISFAL VCHHNTSFIF FSMRNRSVAK FTRLTHISII 300
301 ISVICCALMG YSGFAVFKEK TKGNVLNSFP GTDTAINIAR LCFGFNMLTT FPMEIFVLRD 360
361 VVGNLLHECN LIKNYDEHTQ LSGKQHVVIT SSLVFITMGI SLTTCNLGAL FELIGATTAS 420
421 TMAYILPPYT NLLLTSKKKS WKERLPFYLC ICFGFMIMII SSTQTIIDAV NGSDGQHCQI 480
481
|
| Detection Method: |  |
| Confidence: | 138.958607 |
| Match: | PF01490 |
| Description: | Transmembrane amino acid transporter protein |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [64-480] |
1 11 21 31 41 51
| | | | | |
1 DKKSSMRMAF MNLANSILGA GIITQPFAIK NAGILGGLLS YVALGFIVDW TLRLIVINLT 60
61 LAGKRTYQGT VEHVMGKKGK LLILFTNGLF AFGGCIGYCI IIGDTIPHVL RAIFSQNDGN 120
121 VHFWLRRNVI IVMVTTFISF PLSMKRNIEA LSKASFLAVI SMIIIVLTVV IRGPMLPYDW 180
181 KGHSLKLSDF FMKATIFRSL SVISFALVCH HNTSFIFFSM RNRSVAKFTR LTHISIIISV 240
241 ICCALMGYSG FAVFKEKTKG NVLNSFPGTD TAINIARLCF GFNMLTTFPM EIFVLRDVVG 300
301 NLLHECNLIK NYDEHTQLSG KQHVVITSSL VFITMGISLT TCNLGALFEL IGATTASTMA 360
361 YILPPYTNLL LTSKKKSWKE RLPFYLCICF GFMIMIISST QTIIDAVNGS DGQHCQI
|
| Detection Method: | |
| Confidence: | 1.63 |
| Match: | 2a65A |
| Description: | Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters |
Matching Structure (courtesy of the PDB): |
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