YRC Public Data Repository - Protein Structure Prediction

Protein:	PCM1
Organism:	Saccharomyces cerevisiae
Length:	557 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCM1.

Description	E-value	Query Range	Subject Range
PCM1 - Essential N-acetylglucosamine-phosphate mutase; converts GlcNAc-6-P to GlcNAc-1-P, which is a precur... AGM1_YEAST - Phosphoacetylglucosamine mutase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCM1 PE=...	0.0	[1..557]	[1..557]
AGM1_CANAX - Phosphoacetylglucosamine mutase OS=Candida albicans GN=AGM1 PE=1 SV=1	0.0	[3..554]	[1..544]
PGM3 - phosphoglucomutase 3	0.0	[3..553]	[1..527]
AGM1_MOUSE - Phosphoacetylglucosamine mutase OS=Mus musculus GN=Pgm3 PE=1 SV=1	1.0E-98	[3..553]	[1..527]
AGM1_SCHPO - Phosphoacetylglucosamine mutase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC13C5... SPAC13C5.05c - N-acetylglucosamine-phosphate mutase	6.0E-94	[18..553]	[2..517]
AGM1_ARATH - Phosphoacetylglucosamine mutase OS=Arabidopsis thaliana GN=DRT101 PE=1 SV=1	3.0E-93	[2..555]	[3..551]
CG10627-PA - This gene is referred to in FlyBase by the symbol Dmel\CG10627 (CG10627, FBgn0036298). It is a prote... gi\|220943208 - gi\|220943208\|gb\|ACL84147.1\| CG10627-PA [synthetic construct]	4.0E-91	[11..557]	[12..533]

Back

Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVDYEQLCK LYDDTCRTKN VQFSYGTAGF RTLAKNLDTV MFSTGILAVL RSLKLQGQYV  60
   61 GVMITASHNP YQDNGVKIVE PDGSMLLATW EPYAMQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	1kfiA_
Description:	Exocytosis-sensitive phosphoprotein, pp63/parafusin
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [97-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LANAASFATN FEEFRVELAK LIEHEKIDLN TTVVPHIVVG RDSRESSPYL LRCLTSSMAS  60
   61 VFHAQVLDLG CVTTPQLHYI TDLSNRRKLE GDTAPVATEQ DYYSFFIGAF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	103.37734
Match:	1k2yX_
Description:	Phosphomannomutase/phosphoglucomutase
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [207-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NELFATYQLE KRLSVPKLFI DTANGIGGPQ LKKLLASEDW DVPAEQVEVI NDRSDVPELL  60
   61 NFECGADYVK TNQRLPKGLS PSSFDSLYCS FDGDADRVVF YYVDSGSKFH LLD

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [411-467]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIKSELSKSK LNGDTLALRT LKCFSELINQ TVGDAISDML AVLATLAILK MSPMDWD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	103.37734
Match:	1k2yX_
Description:	Phosphomannomutase/phosphoglucomutase
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [320-410]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDKISTLFAK FLSKQLELAH LEHSLKIGVV QTAYANGSST AYIKNTLHCP VSCTKTGVKH  60
   61 LHHEAATQYD IGIYFEANGH GTIIFSEKFH R

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [468-472]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEYTD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	103.37734
Match:	1k2yX_
Description:	Phosphomannomutase/phosphoglucomutase
Matching Structure (courtesy of the PDB):

Predicted Domain #5

Region A:
Residues: [473-557]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPNKLVKCIV PDRSIFQTTD QERKLLNPVG LQDKIDLVVA KYPMGRSFVR ASGTEDAVRV  60
   61 YAECKDSSKL GQFCDEVVEH VKASA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	103.37734
Match:	1k2yX_
Description:	Phosphomannomutase/phosphoglucomutase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits