YRC Public Data Repository - Protein Structure Prediction

Protein:	RML2
Organism:	Saccharomyces cerevisiae
Length:	393 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RML2.

Description	E-value	Query Range	Subject Range
RML2 - Mitochondrial ribosomal protein of the large subunit, has similarity to E. coli L2 ribosomal protein... gi\|190405516 - gi\|190405516\|gb\|EDV08783.1\| mitochondrial ribosomal protein L2 of the large subunit [Saccharomyces c... RML2_YEAST - 54S ribosomal protein RML2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...	0.0	[1..393]	[1..393]
RL2_BACHD - 50S ribosomal protein L2 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9... RL2_BACHD - 50S ribosomal protein L2 OS=Bacillus halodurans GN=rplB PE=3 SV=1	3.0E-99	[91..387]	[1..276]
RL2_GEOSE - 50S ribosomal protein L2 OS=Geobacillus stearothermophilus GN=rplB PE=1 SV=2	7.0E-99	[91..387]	[1..276]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-98	[93..387]	[2..275]
RL2_AQUAE - 50S ribosomal protein L2 OS=Aquifex aeolicus GN=rplB PE=3 SV=1 RL2_AQUAE - 50S ribosomal protein L2 OS=Aquifex aeolicus (strain VF5) GN=rplB PE=3 SV=1	8.0E-98	[59..385]	[4..299]
RL2_LISMF - 50S ribosomal protein L2 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplB PE=3 SV=1 RL2_LISMO - 50S ribosomal protein L2 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=rpl... RL2_LISIN - 50S ribosomal protein L2 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=rplB PE=3 SV=1 RL2_LISIN - 50S ribosomal protein L2 OS=Listeria innocua GN=rplB PE=3 SV=1 RL2_LISMO - 50S ribosomal protein L2 OS=Listeria monocytogenes GN=rplB PE=3 SV=1 gi\|224503577 - gi\|224503577\|ref\|ZP_03671884.1\| 50S ribosomal protein L2 [Listeria monocytogenes FSL R2-561] gi\|224499302 - gi\|224499302\|ref\|ZP_03667651.1\| 50S ribosomal protein L2 [Listeria monocytogenes Finland 1988] gi\|254899920, gi... - gi\|254899920\|ref\|ZP_05259844.1\| 50S ribosomal protein L2 [Listeria monocytogenes J0161], gi\|15318561... gi\|254825010 - gi\|254825010\|ref\|ZP_05230011.1\| 50S ribosomal protein L2 [Listeria monocytogenes FSL J1-194] RL2_LISMC - 50S ribosomal protein L2 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplB PE=3 SV=1 gi\|254871332, gi... - gi\|254871332\|ref\|ZP_05244042.1\| 50S ribosomal protein L2 [Listeria monocytogenes FSL N1-017], gi\|153... gi\|254854165 - gi\|254854165\|ref\|ZP_05243513.1\| 50S ribosomal protein L2 [Listeria monocytogenes FSL R2-503] gi\|254912874, gi... - gi\|254912874\|ref\|ZP_05262886.1\| 50S ribosomal protein L2 [Listeria monocytogenes J2818], gi\|15319238... gi\|254830939 - gi\|254830939\|ref\|ZP_05235594.1\| 50S ribosomal protein L2 [Listeria monocytogenes 10403S] gi\|153180793, gi... - gi\|254937254\|ref\|ZP_05268951.1\| 50S ribosomal protein L2 [Listeria monocytogenes F6900], gi\|15318079... gi\|254991851 - gi\|254991851\|ref\|ZP_05274041.1\| 50S ribosomal protein L2 [Listeria monocytogenes FSL J2-064] RL2_LISMC - 50S ribosomal protein L2 OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=rplB PE=3 SV=1 gi\|133728648, gi... - gi\|254829078\|ref\|ZP_05233765.1\| 50S ribosomal protein L2 [Listeria monocytogenes FSL N3-165], gi\|153... gi\|254877813 - gi\|254877813\|ref\|ZP_05250523.1\| 50S ribosomal protein L2 [Listeria monocytogenes FSL J2-071] gi\|254931101, gi... - gi\|254931101\|ref\|ZP_05264460.1\| 50S ribosomal protein L2 [Listeria monocytogenes HPB2262], gi\|153204... gi\|255519643 - gi\|255519643\|ref\|ZP_05386880.1\| 50S ribosomal protein L2 [Listeria monocytogenes FSL J1-175]	4.0E-97	[91..388]	[1..277]
gi\|168492165, gi... - gi\|183573638\|gb\|EDT94166.1\| ribosomal protein L2 [Streptococcus pneumoniae CDC0288-04], gi\|168492165... gi\|168489689, gi... - gi\|183571784\|gb\|EDT92312.1\| ribosomal protein L2 [Streptococcus pneumoniae SP195], gi\|168489689\|ref\|... gi\|183577854, gi... - gi\|183577854\|gb\|EDT98382.1\| ribosomal protein L2 [Streptococcus pneumoniae MLV-016], gi\|168576361\|re... gi\|183576130, gi... - gi\|183576130\|gb\|EDT96658.1\| ribosomal protein L2 [Streptococcus pneumoniae CDC3059-06], gi\|168493905... RL2_STRPS - 50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain CGSP14) GN=rplB PE=3 SV=1 RL2_STRPI - 50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rplB PE=3 SV=1 RL2_STRPJ - 50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rplB PE=3... RL2_STRP4 - 50S ribosomal protein L2 OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=rplB PE=3 SV=1 gi\|183570864, gi... - gi\|183570864\|gb\|EDT91392.1\| ribosomal protein L2 [Streptococcus pneumoniae CDC1087-00], gi\|168486022... gi\|172042840, gi... - gi\|172042840\|gb\|EDT50886.1\| ribosomal protein L2 [Streptococcus pneumoniae CDC1873-00], gi\|168483848... RL2_STRR6 - 50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rplB PE=3 SV=1 RL2_STRP2 - 50S ribosomal protein L2 OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rplB PE=... RL2_STRPN - 50S ribosomal protein L2 OS=Streptococcus pneumoniae GN=rplB PE=3 SV=1 gi\|148996633, gi... - gi\|148996633\|ref\|ZP_01824351.1\| ribosomal protein L2 [Streptococcus pneumoniae SP11-BS70], gi\|147757... gi\|147928514, gi... - gi\|148992788\|ref\|ZP_01822431.1\| ribosomal protein L2 [Streptococcus pneumoniae SP9-BS68], gi\|1479285... gi\|148987948, gi... - gi\|148987948\|ref\|ZP_01819411.1\| ribosomal protein L2 [Streptococcus pneumoniae SP6-BS73], gi\|1479264... gi\|148983610, gi... - gi\|148983610\|ref\|ZP_01816929.1\| ribosomal protein L2 [Streptococcus pneumoniae SP3-BS71], gi\|1479237... RL2_STRPN - 50S ribosomal protein L2 OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=rpl... RL2_STRZJ - 50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain JJA) GN=rplB PE=3 SV=1 RL2_STRZP - 50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain P1031) GN=rplB PE=3 SV=1 RL2_STRP7 - 50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain 70585) GN=rplB PE=3 SV=1 gi\|147931464, gi... - gi\|149017900\|ref\|ZP_01834359.1\| ribosomal protein L2 [Streptococcus pneumoniae SP23-BS72], gi\|147931... RL2_STRZT - 50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rplB PE=3 SV=1 gi\|149011080, gi... - gi\|149011080\|ref\|ZP_01832385.1\| ribosomal protein L2 [Streptococcus pneumoniae SP19-BS75], gi\|147764... gi\|237649720 - gi\|237649720\|ref\|ZP_04523972.1\| 50S ribosomal protein L2 [Streptococcus pneumoniae CCRI 1974] gi\|147762317, gi... - gi\|149005961\|ref\|ZP_01829690.1\| ribosomal protein L2 [Streptococcus pneumoniae SP18-BS74], gi\|147762... gi\|237821418 - gi\|237821418\|ref\|ZP_04597263.1\| 50S ribosomal protein L2 [Streptococcus pneumoniae CCRI 1974M2] gi\|147760141, gi... - gi\|149001683\|ref\|ZP_01826656.1\| 50S ribosomal protein L2 [Streptococcus pneumoniae SP14-BS69], gi\|14... gi\|242235269, gi... - gi\|242246207\|ref\|ZP_04800644.1\| 50S ribosomal protein L2 [Streptococcus pneumoniae TCH8431/19A], gi\|...	1.0E-96	[91..389]	[1..277]
gi\|1165306 - gi\|1165306\|gb\|AAC45959.1\| L2 [Bacillus subtilis]	1.0E-96	[91..388]	[1..277]
RL2_STRP3 - 50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=rp... RL2_STRP6 - 50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=... RL2_STRP6 - 50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M6 GN=rplB PE=3 SV=1 RL2_STRP8 - 50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=rplB PE=3 SV=1 gi\|15674290, gi\|... - gi\|15674290\|ref\|NP_268463.1\| 50S ribosomal protein L2 [Streptococcus pyogenes M1 GAS], gi\|13621370\|g... RL2_STRP8 - 50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M18 GN=rplB PE=3 SV=1 RL2_STRPQ - 50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=rplB PE=3 SV=1 gi\|242390146, gi... - gi\|251781518\|ref\|YP_002995819.1\| 50S ribosomal protein L2 [Streptococcus dysgalactiae subsp. equisim... RL2_STRPB - 50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rplB PE=3 SV=1 RL2_STRPM - 50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M28 GN=rplB PE=3 SV=1 RL2_STRPZ - 50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rplB PE=3 SV=1 RL2_STRPY - (P60434) 50S ribosomal protein L2 RL2_STRPC - 50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rplB PE=3 SV=1 RL2_STRPD - 50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rplB PE=3 SV=1 RL2_STRP1 - 50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M1 GN=rplB PE=3 SV=1 RL2_STRPM - 50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=rplB PE=3 SV=1 RL2_STRP3 - 50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M3 GN=rplB PE=3 SV=1 gi\|71852643, gi\|... - gi\|71909861\|ref\|YP_281411.1\| 50S ribosomal protein L2 [Streptococcus pyogenes MGAS5005], gi\|71852643... RL2_STRPG - 50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rplB PE=3 SV=1	2.0E-96	[91..389]	[1..277]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVLGSLRSA LSCSSTASLI SKRNPCYPYG ILCRTLSQSV KLWQENTSKD DSSLNITPRL  60
   61 LKIIPNDTDI VTLEKQDELI KRRRKLS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-393]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEVTQMKRLK PVSPGLRWYR SPIYPYLYKG RPVRALTVVR KKHGGRNNSG KITVRHQGGG  60
   61 HRNRTRLIDF NRWEGGAQTV QRIEYDPGRS SHIALLKHNT TGELSYIIAC DGLRPGDVVE 120
  121 SFRRGIPQTL LNEMGGKVDP AILSVKTTQR GNCLPISMIP IGTIIHNVGI TPVGPGKFCR 180
  181 SAGTYARVLA KLPEKKKAIV RLQSGEHRYV SLEAVATIGV VSNIDHQNRS LGKAGRSRWL 240
  241 GIRPTVRGVA MNKCDHPHGG GRGKSKSNKL SMSPWGQLAK GYKTRRGKNQ NRMKVKDRPR 300
  301 GKDARL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	542.512579
Match:	1lnrA_
Description:	No description for 1lnrA_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits