YRC Public Data Repository - Protein Structure Prediction

Protein:	TCA17
Organism:	Saccharomyces cerevisiae
Length:	152 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TCA17.

Description	E-value	Query Range	Subject Range
gi\|45270774 - gi\|45270774\|gb\|AAS56768.1\| YEL048C [Saccharomyces cerevisiae]	297.0	[0..1]	[152..1]
gi\|49528136 - gi\|49528136\|emb\|CAG61793.1\| unnamed protein product [Candida glabrata] gi\|50292781, gi\|... - gi\|50292781\|ref\|XP_448823.1\| unnamed protein product [Candida glabrata], gi\|49528136\|emb\|CAG61793.1\|...	129.0	[0..3]	[145..5]
gi\|44984932 - gi\|44984932\|gb\|AAS53756.1\| AFR385Wp [Ashbya gossypii ATCC 10895] gi\|44984932, gi\|... - gi\|45198903\|ref\|NP_985932.1\| AFR385Wp [Ashbya gossypii ATCC 10895], gi\|44984932\|gb\|AAS53756.1\| AFR38...	107.0	[0..2]	[141..6]
gi\|49644967 - gi\|49644967\|emb\|CAG98539.1\| KLLA0F16731p [Kluyveromyces lactis] gi\|49644967, gi\|... - gi\|50311611\|ref\|XP_455831.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644967\|emb\|CAG9853...	73.0	[0..3]	[144..10]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRPCFVSL IDESDKPILI YVPNEAENEM NDVLKYNVLS NISLDYFESA LVEWHSLDSK  60
   61 PLLKSIFQLE GVSVFAMLIK QTGLKIVIGF EQKSLSGADD EFEAINQIFE TVRKIYIRVK 120
  121 CNPLLVSGDE KSIIKSLERK FDELFISTEV EL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.74
Match:	2j3wA
Description:	No description for 2j3wA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits