YRC Public Data Repository - Protein Structure Prediction

Protein:	IES6
Organism:	Saccharomyces cerevisiae
Length:	166 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IES6.

Description	E-value	Query Range	Subject Range
gi\|45269501 - gi\|45269501\|gb\|AAS56131.1\| YEL044W [Saccharomyces cerevisiae]	234.0	[0..27]	[166..27]
gi\|109121959 - gi\|109121959\|ref\|XP_001104744.1\| PREDICTED: similar to CG12659-PB [Macaca mulatta]	162.0	[0..35]	[165..70]
INO80C - INO80 complex subunit C gi\|114672823 - gi\|114672823\|ref\|XP_001135459.1\| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]	162.0	[0..35]	[165..70]
gi\|114672825, gi... - gi\|114672829\|ref\|XP_001135216.1\| PREDICTED: similar to C18orf37 protein isoform 2 [Pan troglodytes],... gi\|119621762, gi... - gi\|29124572\|gb\|AAH48989.1\| C18orf37 protein [Homo sapiens], gi\|119621762\|gb\|EAX01357.1\| chromosome 1...	161.0	[0..35]	[165..15]
gi\|73961737 - gi\|73961737\|ref\|XP_547606.2\| PREDICTED: similar to CG12659-PB [Canis familiaris]	158.0	[0..35]	[165..124]
gi\|157279003, gi... - gi\|76672705\|ref\|XP_612826.2\| PREDICTED: hypothetical protein isoform 1 [Bos taurus], gi\|157427934\|re...	157.0	[0..35]	[165..70]
IES6_SCHPO - Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=... ies6 - chromatin remodeling complex subunit Ies6	157.0	[0..47]	[166..18]
IN80C_MOUSE - INO80 complex subunit C OS=Mus musculus GN=Ino80c PE=1 SV=1	154.0	[0..35]	[165..69]

Back

Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSRGNSSN SSVSNNSNNN NNNDGGDERL LFLRSVGERN EIGFPSRFKS AHYKKPTRRH  60
   61 KSARQLISDE NKRINALLTK ANKAAESSTA ARRLVPKATY FSVEAPPSIR PAKKYCDVTG 120
  121 LKGFYKSPTN NIRYHNAEIY QLIVKPMAPG VDQEYLKLRG ANFVLK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits