YRC Public Data Repository - Protein Structure Prediction

Protein:	YEF1
Organism:	Saccharomyces cerevisiae
Length:	495 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEF1.

Description	E-value	Query Range	Subject Range
YEF1_YEAST - ATP-NADH kinase YEF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEF1 PE=1 SV=1 YEF1 - ATP-NADH kinase; phosphorylates both NAD and NADH; homooctameric structure consisting of 60-kDa subu...	0.0	[1..495]	[1..495]
gi\|85103418 - gi\|85103418\|ref\|XP_961517.1\| hypothetical protein NCU03741 [Neurospora crassa OR74A] gi\|32404860, gi\|... - gi\|32404860\|ref\|XP_323043.1\| related to UTR1 (associated with ferric reductase activity) [MIPS] [Neu...	0.0	[43..432]	[149..612]
SPCC24B10.02c - NAD /NADH kinase YJN2_SCHPO - Uncharacterized kinase C24B10.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC24B1...	7.0E-96	[76..432]	[67..416]
gi\|55743112 - ref\|NP_075394.3\| NAD kinase [Homo sapiens] NADK - NAD kinase	8.0E-93	[106..431]	[104..436]
PPNK_MOUSE, NADK... - (P58058) Putative inorganic polyphosphate/ATP-NAD kinase (EC 2.7.1.23) (Poly(P)/ATP NAD kinase), NAD...	8.0E-92	[106..431]	[104..432]
CG33156-PA - This gene is referred to in FlyBase by the symbol Dmel\CG33156 (CG33156, FBgn0053156). It is a prote... gi\|220950314 - gi\|220950314\|gb\|ACL87700.1\| CG33156-PA [synthetic construct]	7.0E-87	[106..429]	[103..426]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTDRLLINA SPETCTKGDA EMDTMDTIDR MTSVKVLAEG KVLSNFEEPG LMRCGYHDAK  60
   61 NWVRRLSSET IVGEDTSNLY PFYVDTAYDV RRLRKDLIN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [100-443]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKVDLQVENL IIICNINDIS TVFLMREVVE WILRNFHSIT VYVQDIFKKS TQFAVGDLCK  60
   61 DSNCSKNRVK YWSKEFVKKH DSFFDLMITL GGDGTVLFAS SIFTKDVPPI VPFALGSLGF 120
  121 LTNFEFQNFK ETLKHILTDE VRINLRMRLQ CKLYRRNKPE IDAATGRKIC YIDFISEHHV 180
  181 LNEVTIDRGP APCLSLLELY GNDSLMTKVQ GDGLIVATPT GSTAYSLSAG GSLISPSVNA 240
  241 IAVTPICPHT LSFRPIILPD SMELKVRVDM NSRGTSWVNF DGKDRVELKQ GDYVVITASP 300
  301 YSVPTIESSA SEFFESISKN LNWNDREEQK PFAHILSPKN QEKY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	138.387216
Match:	PF01513
Description:	ATP-NAD kinase

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [444-495]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLDSSKNGND TISNPLESSC ISSDAQDEER KSVTETETEI VVERTRQAHF AI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits