YRC Public Data Repository - Protein Structure Prediction

Protein:	YEA4
Organism:	Saccharomyces cerevisiae
Length:	342 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEA4.

Description	E-value	Query Range	Subject Range
YEA4_YEAST - UDP-N-acetylglucosamine transporter YEA4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... YEA4 - Uridine diphosphate-N-acetylglucosamine (UDP-GlcNAc) transporter required for cell wall chitin synth... gi\|190405557 - gi\|190405557\|gb\|EDV08824.1\| UDP-N-acetylglucosamine transporter YEA4 [Saccharomyces cerevisiae RM11-...	1.0E-43	[1..342]	[1..342]
TPT_ORYSJ - Triose phosphate/phosphate translocator TPT, chloroplastic OS=Oryza sativa subsp. japonica GN=TPT PE...	3.0E-43	[9..337]	[113..415]
gi\|9295273 - gi\|9295273\|gb\|AAF86906.1\|AF223358_1 triose phosphate/phosphate translocator precursor [Mesembryanthe...	1.0E-42	[9..338]	[99..402]
CPT1_BRAOL - (P52177) Triose phosphate/phosphate translocator, chloroplast precursor (CTPT) TPT1_BRAOB - Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=...	5.0E-42	[10..339]	[103..406]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	8.0E-42	[10..338]	[97..399]
TPT_SOLTU - Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1	2.0E-41	[10..338]	[110..412]
gi\|13518113 - gi\|13518113\|gb\|AAK27373.1\| triose phosphate/phosphate translocator [Oryza sativa]	2.0E-41	[9..337]	[113..415]
TPT_SPIOL - Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1	3.0E-41	[9..335]	[99..399]
gi\|85118037 - gi\|85118037\|ref\|XP_965367.1\| hypothetical protein NCU02980 [Neurospora crassa OR74A] gi\|32419449, gi\|... - gi\|32419449\|ref\|XP_330168.1\| related to UDP N-ACETYLGLUCOSAMINE TRANSPORTER (MNN2) [MIPS] [Neurospor...	5.0E-41	[2..341]	[77..425]
SLC35B4 - solute carrier family 35, member B4 gi\|55629450 - gi\|55629450\|ref\|XP_519393.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	1.0E-40	[6..342]	[5..329]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWNSLKAFAL VFGGCCSNVI TFETLMSNET GSINNLITFC QFLFVTCQGL PEFLDVHQPF  60
   61 PYFKPLKTPL HVYVITVVLF YISSTTNNNV FKYNISIPIH IVFRCFGTVI TMFTCWLLNG 120
  121 RKYTKIQILS TLFLTIGAII ASLFKDADFR YQDLKLQAWK I

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [162-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSDQSVDLTF IFGICILVLS SFTSSLLSAY NERTYQKYGK HWKENIFYSH FLSLPLFLFS  60
   61 RKQLIHEYRV MRKSERILCS NFGGKILVPR EETLLLFNVL TQYFCVKGVN ILASKTNALT 120
  121 LSITLLVRKF ISLLLSVRLF DNNLSYTGYI GVYLVFFGAF IYSLGSIHPR QNDKGAIKKS 180
  181 K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [235-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SERILCSNFG GKILVPREET LLLFNVLTQY FCVKGVNILA SKTNALTLSI TLLVRKFISL  60
   61 LLSVRLFDNN LSYTGYIGVY LVFFGAFIYS LGSIHPRQND KGAIKKSK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.86
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits