YRC Public Data Repository - Protein Structure Prediction

Protein:	GIM4
Organism:	Saccharomyces cerevisiae
Length:	123 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GIM4.

Description	E-value	Query Range	Subject Range
GIM4 - Subunit of the heterohexameric cochaperone prefoldin complex which binds specifically to cytosolic c... gi\|190405558 - gi\|190405558\|gb\|EDV08825.1\| prefoldin subunit 2 [Saccharomyces cerevisiae RM11-1a] gi\|151944705 - gi\|151944705\|gb\|EDN62964.1\| conserved protein [Saccharomyces cerevisiae YJM789]	1.0E-28	[1..123]	[1..123]
gi\|5690431 - gi\|5690431\|gb\|AAD47084.1\|AF165883_1 prefoldin subunit 2 [Homo sapiens]	3.0E-26	[22..121]	[29..128]
FBpp0304954, l(3... - The gene lethal (3) 01239 is referred to in FlyBase by the symbol Dmel\l(3)01239 (CG6302, FBgn001074...	4.0E-21	[22..120]	[17..115]
PFD2_ARATH - Probable prefoldin subunit 2 OS=Arabidopsis thaliana GN=At3g22480 PE=2 SV=1	3.0E-20	[24..122]	[23..121]
PFD2_SCHPO - Probable prefoldin subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.10 PE... SPAC227.10 - prefoldin subunit 2	4.0E-20	[19..122]	[10..113]
PFDB_PYRAE - Prefoldin subunit beta OS=Pyrobaculum aerophilum GN=pfdB PE=3 SV=1 PFDB_PYRAE - Prefoldin subunit beta OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NB...	5.0E-19	[20..122]	[11..113]
PFDB_SULSO - Prefoldin subunit beta OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN... PFDB_SULSO - Prefoldin subunit beta OS=Sulfolobus solfataricus GN=pfdB PE=3 SV=1 gi\|241768407, gi... - gi\|241768407\|ref\|ZP_04765832.1\| prefoldin, beta subunit [Sulfolobus solfataricus 98/2], gi\|241219843...	6.0E-18	[22..122]	[14..114]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHVANFILLT IFVFSLCIVF QAKYNEYKQI LEELQTKIIE LGHDKDEHTI VIKTLKDAEP  60
   61 TRKCYRMIGG ALVESDVQTS LPILETKKEN IEGTISKMKE TLIQTAKEFE KWKKDNKIQV 120
  121 VKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.154902
Match:	1fxkB_
Description:	Prefoldin beta subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits