Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YRF1-8, YRF1-5, ....
| Description | E-value | Query Range |
Subject Range |
|
|
2824.0 | [0..1] | [1796..65] |
|
Region A: Residues: [1-141] |
1 11 21 31 41 51
| | | | | |
1 MKVSDRRKFE KANFDEFESA LNNKNDLVHC PSITLFESIP TEVRSFYEDE KSGLIKVVKF 60
61 RTGAMDRKRS FEKIVISVMV GKNVQKFLTF VEDEPDFQGG PIPSKYLIPK KINLMVYTLF 120
121 QVHTLKFNRK DYDTLSLFYL N
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.758 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.743 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.743 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.712 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.712 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.686 | N/A | N/A | a.29.11 | Description not found. |
| View | Download | 0.631 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.595 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.554 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.550 | N/A | N/A | a.48.1 | N-terminal domain of cbl (N-cbl) |
|
Region A: Residues: [142-741] |
1 11 21 31 41 51
| | | | | |
1 RGYYNELSFR VLERCHEIAS ARPNDSSTMR TFTDFVSGAP IVRSLQKSTI RKYGYNLAPY 60
61 MFLLLHVDEL SIFSAYQASL PGEKKVDTER LKRDLCPRKP IEIKYFSQIC NDMMNKKDRL 120
121 GDILHIILRA CALNFGAGPR GGAGDEEDRS ITNEEPIIPS VDEHGLKVCK LRSPNTPRRL 180
181 RKTLDAVKAL LVSSCACTAR DLDIFDDTNG VAMWKWIKIL YHEVAQETTL KDSYRITLVP 240
241 SSDGISVCGK LFNREYVRGF YFACKAQFDN LWGELNNCFY MPTVVDIASL ILRNREVLFR 300
301 EPKRGIDEYL ENDSFLQMIP VKYREIVLPK LRRDTNKMTA ALKNKVTVAI DELTVPLMWM 360
361 VHFAVGYPYR YPELQLLAFA GPQRNVYVDD TTRRIQLYTD YNKNGSSEPR LKTLDGLTSD 420
421 YVFYFVTVLR QMQICALGNS YDAFNHDPWM DVVGFEDPDQ VTNRDISRIV LYSYMFLNTA 480
481 KGCLVEYATF RQYMRELPKN APQKLNFREM RQGLIALGRH CVGSRFETDL YESATSELMA 540
541 NHSVQTGRNI YGVDSFSLTS VSGTTATLLQ ERASERWIQW LGLESDYHCS FSSTRNAEDV 600
601
|
| Detection Method: | |
| Confidence: | 7.99 |
| Match: | |
| Description: | No description for 1mukA was found. |
|
Region A: Residues: [742-1176] |
1 11 21 31 41 51
| | | | | |
1 VAGEAASSDH DQKISRVTRK RPREPKSTND ILVAGQKLFG SSFEFRDLHQ LRLCHEIYMA 60
61 DTPSVAVQAP PGYGKTELFH LPLIALASKG DVKYVSFLFV PYTVLLANCM IRLSRCGCLN 120
121 VAPVRNFIEE GCDGVTDLYV GIYDDLASTN FTDRIAAWEN IVECTFRTNN VKLGYLIVDE 180
181 FHNFETEVYR QSQFGGITNL DFDAFEKAIF LSGTAPEAVA DAALQRIGLT GLAKKSMDIN 240
241 ELKRSEDLSR GLSSYPTRMF NLIKEKSEVP LGHVHKIWKK VESQPEEALK LLLALFEIEP 300
301 ESKAIVVAST TNEVEELACS WRKYFRVVWI HGKLGAAEKV SRTKEFVTDG SMRVLIGTKL 360
361 VTEGIDIKQL MMVIMLDNRL NIIELIQGVG RLRDGGLCYL LSRKNSWAAR NRKGELPPIK 420
421 EGCITEQVRE FYGLE
|
| Detection Method: | |
| Confidence: | 165.9897 |
| Match: | 1fuuA |
| Description: | Initiation factor 4a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1177-1235] |
1 11 21 31 41 51
| | | | | |
1 SKKGKKGQHV GCCGSRTDLS ADTVELIERM DRLAEKQATA SMSIIALPSS FQESNSSDR
|
| Detection Method: | |
| Confidence: | 14.52 |
| Match: | |
| Description: | No description for 1m2vB was found. |
|
Region A: Residues: [1236-1485] |
1 11 21 31 41 51
| | | | | |
1 CRKYCSSDED SDTCIHGSAN ASTNATTNSS TNATTTASTN VRTSATTTAS INVRTSAITT 60
61 ESTNSSTNAT TTASTNVRTS ATTTASINVR TSATTTESTN SNTSATTTES TDSNTSATTT 120
121 ESTDSNTSAT TTASTNSSTN ATTTASTNSS TNATTTESTN ASAKEDANKD GNAEDNRFHP 180
181 VTDINKESYK RKGSQMVLLE RKKLKAQFPN TSENMNVLQF LGFRSDEIKH LFLYGIDVYF 240
241 CPEGVFTQYG
|
| Detection Method: | |
| Confidence: | 7.3 |
| Match: | |
| Description: | No description for 1bziA was found. |
|
Region A: Residues: [1486-1796] |
1 11 21 31 41 51
| | | | | |
1 LCKGCQKMFE LCVCWAGQKV SYRRMAWEAL AVERMLRNDE EYKEYLEDIE PYHGDPVGYL 60
61 KYFSVKRGEI YSQIQRNYAW YLAITRRRET ISVLDSTRGK QGSQVFRMSG RQIKELYYKV 120
121 WSNLRESKTE VLQYFLNWDE KKCREEWEAK DDTVFVEALE KVGVFQRLRS MTSAGLQGPQ 180
181 YVKLQFSRHH RQLRSRYELS LGMHLRDQLA LGVTPSKVPH WTAFLSMLIG LFYNKTFRQK 240
241 LEYLLEQISE VWLLPHWLDL ANVEVLAADN TRVPLYMLMV AVHKELDSDD VPDGRFDIIL 300
301 LCRDSSREVG E
|
| Detection Method: | |
| Confidence: | 7.93 |
| Match: | |
| Description: | No description for 1itwA was found. |
