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View Structure Prediction Details

Protein: RBA50
Organism: Saccharomyces cerevisiae
Length: 439 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBA50.

Description E-value Query
Range
Subject
Range
gi|6320735|ref|N... - Protein involved in transcription; interacts with RNA polymerase II subunits Rpb2p, Rpb3, and Rpb11p...
RBA50 - Protein involved in transcription; interacts with RNA polymerase II subunits Rpb2p, Rpb3, and Rpb11p...
0.0 [1..439] [1..439]
RBA50_SCHPO - RNA polymerase II-associated protein rba50 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN...
rba50 - RNA polymerase II associated protein
0.0 [2..430] [10..442]
gi|7021495 - gi|7021495|gb|AAF35374.1| unknown [Drosophila melanogaster]
5.0E-37 [263..364] [294..398]
gi|7243187 - gi|7243187|dbj|BAA92641.1| KIAA1403 protein [Homo sapiens]
3.0E-33 [66..170] [234..344]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
2.0E-17 [285..356] [29..111]

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Predicted Domain #1
Region A:
Residues: [1-138]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLGDIVEK DTSDSVESND NGTLSTNNCG TGFPELYKPK KISSWKERLR EKRAQKKKTS  60
   61 GKDAEKQQTS TDAPLSEAKS IHNENIKVLQ GMSDEQIVQE REDLYNSLDP KLIAKLLKNI 120
  121 NKRAKDENNT PLFAEIEG

[Run NCBI BLAST on this sequence.]

Detection Method: Pcons
Confidence: 2.14
Match: 1b3uA
Description: Constant regulatory domain of protein phosphatase 2a, pr65alpha
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [139-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASGTWVGGNK QGIYDLPPLD DEDVDVALEI RPMLGKDAKH VQFEEAGKEK DVEGEGKTND  60
   61 DVDDIAPLDF QMAQCIDHMK NEELFKDVHF IKEESQNEIN LEKLDINDPN FNDKLHEKYF 120
  121 PDLPKEVDKL KWMQPVQQKT DKNYIIEDVS E

[Run NCBI BLAST on this sequence.]

Detection Method: Pcons
Confidence: 2.14
Match: 1b3uA
Description: Constant regulatory domain of protein phosphatase 2a, pr65alpha
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [290-439]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CRFDFNGDLV PPTRQIDSTI HSGLHHHSDS PELAGYTIVE LEHLARSTFP SQRCIAIQTL  60
   61 GRILYKLGQK SYYQLVPEID ADTYKEDGSI SNVMDKIYSM FWDLIKDGKV IESLEISSDE 120
  121 KFTRNLSVRN YAIDALWLWK QGGGDFRTKK 

[Run NCBI BLAST on this sequence.]

Detection Method: Pcons
Confidence: 2.14
Match: 1b3uA
Description: Constant regulatory domain of protein phosphatase 2a, pr65alpha
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle