YRC Public Data Repository - Protein Structure Prediction

Protein:	SNA2
Organism:	Saccharomyces cerevisiae
Length:	79 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNA2.

Description	E-value	Query Range	Subject Range
RC23_ARATH - UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=3 SV=1	89.0	[0..2]	[71..4]
gi\|145009364, gi... - gi\|39949765\|ref\|XP_363224.1\| hypothetical protein MGG_08808 [Magnaporthe grisea 70-15], gb\|EAA51286....	87.0	[0..1]	[66..1]
gi\|47132406 - gi\|47132406\|gb\|AAT11798.1\| salt and low temperature response protein [Brassica rapa subsp. pekinensi...	86.0	[0..2]	[71..4]
CE12682 - status:Predicted UniProt:P92009 protein_id:CAB03250.1	86.0	[0..2]	[65..23]
gi\|46121245, gi\|... - gi\|46121245\|ref\|XP_385177.1\| hypothetical protein FG05001.1 [Gibberella zeae PH-1], gi\|42551259\|gb\|E...	85.0	[0..1]	[67..1]
gi\|238506933, gi... - gi\|238506933\|ref\|XP_002384668.1\| stress response RCI peptide, putative [Aspergillus flavus NRRL3357]... gi\|83776210 - gi\|83776210\|dbj\|BAE66329.1\| unnamed protein product [Aspergillus oryzae] gi\|169786003 - gi\|169786003\|ref\|XP_001827462.1\| hypothetical protein [Aspergillus oryzae RIB40]	84.0	[0..1]	[66..1]
gi\|54610977 - gi\|54610977\|gb\|AAV35467.1\| cold and salt response protein [Brassica napus]	83.0	[0..2]	[71..4]
gi\|56412215 - gi\|56412215\|gb\|AAV88602.1\| low temperature and salt responsive protein [Pennisetum glaucum]	82.0	[0..2]	[71..5]
gi\|125564680 - gi\|125564680\|gb\|EAZ10060.1\| hypothetical protein OsI_32364 [Oryza sativa Indica Group] OSR8_ORYSA - Hydrophobic protein OSR8 - Oryza sativa (Rice) OSR8_ORYSJ - Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1	82.0	[0..3]	[69..6]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHARDWFLVF IAIFIPPLAV WLKRGFFTKD LLINFLLFLL GFFPGLIHAL YVISCHPYEE  60
   61 NEARYSHLSS SDDNYGSLA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.853872
Match:	PF01679.8
Description:	No description for PF01679.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.801	N/A	N/A	a.64.1	Saposin
View	Download	0.578	N/A	N/A	a.64.1	Saposin
View	Download	0.556	N/A	N/A	a.8.9	Description not found.
View	Download	0.545	N/A	N/A	a.21.1	HMG-box
View	Download	0.545	N/A	N/A	a.21.1	HMG-box
View	Download	0.540	N/A	N/A	a.64.1	Saposin
View	Download	0.537	N/A	N/A	a.76.1	Iron-dependent represor protein, dimerization domain
View	Download	0.537	N/A	N/A	a.76.1	Iron-dependent represor protein, dimerization domain
View	Download	0.535	N/A	N/A	a.21.1	HMG-box

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits