YRC Public Data Repository - Protein Structure Prediction

Protein:	GRX2
Organism:	Saccharomyces cerevisiae
Length:	143 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRX2.

Description	E-value	Query Range	Subject Range
gi\|151942474 - gi\|151942474\|gb\|EDN60830.1\| glutaredoxin [Saccharomyces cerevisiae YJM789] gi\|190404569 - gi\|190404569\|gb\|EDV07836.1\| glutaredoxin [Saccharomyces cerevisiae RM11-1a] GRX2 - Cytoplasmic glutaredoxin, thioltransferase, glutathione-dependent disulfide oxidoreductase involved ... GLRX2_YEAST - Glutaredoxin-2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GRX2 PE=1 ...	1.0E-35	[1..143]	[1..143]
gi\|19548658 - gi\|19548658\|gb\|AAL90750.1\| glutaredoxin [Populus tremula x Populus tremuloides]	2.0E-29	[1..138]	[1..126]
gi\|2724050, gi\|2... - gi\|2724056\|gb\|AAB92658.1\| glutaredoxin type I [Fritillaria agrestis], gi\|2724054\|gb\|AAB92657.1\| glut...	8.0E-29	[40..140]	[2..98]
GRXC4_ARATH - Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2	7.0E-28	[7..138]	[4..125]
gi\|116310771, gi... - gi\|125548975\|gb\|EAY94797.1\| hypothetical protein OsI_16580 [Oryza sativa Indica Group], gi\|116310771... GRXC6_ORYSA, GLR... - Glutaredoxin-C6 (Glutaredoxin-C2 homolog 1) - Oryza sativa (Rice), (P55142) Glutaredoxin GRXC6_ORYSJ - Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2	2.0E-27	[40..140]	[2..98]
GLRX2 - glutaredoxin 2	3.0E-27	[19..140]	[35..152]
gi\|15637350 - gi\|15637350\|gb\|AAL04507.1\|AF406809_1 glutaredoxin [Tilia platyphyllos]	3.0E-27	[40..138]	[2..96]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	5.0E-27	[40..140]	[2..98]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METNFSFDSN LIVIIIITLF ATRIIAKRFL STPKMVSQET VAHVKDLIGQ KEVFVAAKTY  60
   61 CPYCKATLST LFQELNVPKS KALVLELDEM SNGSEIQDAL EEISGQKTVP NVYINGKHIG 120
  121 GNSDLETLKK NGKLAEILKP VFQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	126.522879
Match:	1kte__
Description:	Glutaredoxin (Grx, thioltransferase)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits