| Protein: | GNP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 663 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GNP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..663] | [1..663] |
|
|
0.0 | [22..662] | [1..608] |
|
|
0.0 | [22..663] | [1..609] |
|
|
0.0 | [92..663] | [15..582] |
|
Region A: Residues: [1-121] |
1 11 21 31 41 51
| | | | | |
1 MTLGNRRHGR NNEGSSNMNM NRNDLDDVSH YEMKEIQPKE KQIGSIEPEN EVEYFEKTVE 60
61 KTIENMEYEG EHHASYLRRF IDSFRRAEGS HANSPDSSNS NGTTPISTKD SSSQLDNELN 120
121 R
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.382 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.360 | b.34.9 | Tudor/PWWP/MBT |
| View | Download | 0.495 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.337 | a.4.3 | ARID-like |
| View | Download | 0.293 | a.24.12 | Outer surface protein C (OspC) |
| View | Download | 0.228 | a.74.1 | Cyclin-like |
| View | Download | 0.221 | a.75.1 | Ribosomal protein S7 |
| View | Download | 0.212 | a.1.1 | Globin-like |
| View | Download | 0.202 | a.24.2 | Aspartate receptor, ligand-binding domain |
|
Region A: Residues: [122-663] |
1 11 21 31 41 51
| | | | | |
1 KSSYITVDGI KQSPQEQEQK QENLKKSIKP RHTVMMSLGT GIGTGLLVGN SKVLNNAGPG 60
61 GLIIGYAIMG SCVYCIIQAC GELAVIYSDL IGGFNTYPLF LVDPALGFSV AWLFCLQWLC 120
121 VCPLELVTAS MTIKYWTTSV NPDVFVVIFY VLIVVINVFG AKGYAEADFF FNCCKILMIV 180
181 GFFILAIIID CGGAGTDGYI GSKYWRDPGA FRGDTPIQRF KGVVATFVTA AFAFGMSEQL 240
241 AMTASEQSNP RKAIPSAAKK MIYRILFVFL ASLTLVGFLV PYTSDQLLGA AGSATKASPY 300
301 VIAVSSHGVR VVPHFINAVI LLSVLSVANG AFYTSSRILM SLAKQGNAPK CFDYIDREGR 360
361 PAAAMLVSAL FGVIAFCASS KKEEDVFTWL LAISGLSQLF TWITICLSHI RFRRAMKVQG 420
421 RSLGEVGYKS QVGVWGSAYA VLMMVLALIA QFWVAIAPIG GGGKLSAQSF FENYLAMPIW 480
481 IALYIFYKVW KKDWSLFIPA DKVDLVSHRN IFDEELLKQE DEEYKERLRN GPYWKRVLDF 540
541 WC
|
| Detection Method: | |
| Confidence: | 211.124939 |
| Match: | PF00324 |
| Description: | Amino acid permease |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
