YRC Public Data Repository - Protein Structure Prediction

Protein:	IZH1
Organism:	Saccharomyces cerevisiae
Length:	316 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IZH1.

Description	E-value	Query Range	Subject Range
paqr-1 - status:Partially_confirmed UniProt:Q94177 protein_id:AAB09107.2	6.0E-85	[4..303]	[124..419]
IZH1_YEAST - ADIPOR-like receptor IZH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IZH1 PE=1 SV=1 gi\|207346210 - gi\|207346210\|gb\|EDZ72775.1\| YDR492Wp-like protein [Saccharomyces cerevisiae AWRI1631] IZH1 - Membrane protein involved in zinc ion homeostasis, member of the four-protein IZH family; transcript...	3.0E-79	[1..316]	[1..316]
ADR1_MOUSE - Adiponectin receptor protein 1 OS=Mus musculus GN=Adipor1 PE=1 SV=1	2.0E-78	[32..312]	[86..364]
ADRL_SCHPO - ADIPOR-like receptor SPBC12C2.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC12C2... SPBC12C2.09c - Haemolysin-III family protein	2.0E-67	[22..312]	[30..317]
gi\|18377749 - gi\|18377749\|gb\|AAL67024.1\| unknown protein [Arabidopsis thaliana]	3.0E-65	[17..313]	[5..353]

Back

Predicted Domain #1

Region A:
Residues: [1-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSITTTRRRN QDSVCCKATR ASIKVEAVSG QTVFEKQKLL HNFDELPEWQ KDNDKILTGY  60
   61 VRETLSWKKC LYSLFYWNNE TVNIYTHLVP AIVYFVFAIT LTNYFLIPVF PSTSWSDYTV 120
  121 INIFLMGAFS CLMCSSCFHC MKQHSEKQSN FWSKLDYLGI ISLISCSMIP IIYFGYFDHI 180
  181 SYFSLFTIVT LVLATFCTVC VLHDKFNTST FRPFRAMFFI LFGFSGLLPL TTGFFKFGIQ 240
  241 GVLNRIKVSF VFWEALFYIS GAVIYGFRIP ETLAPGKFDF FGSSHQIFHI MVVLGSVCHL 300
  301 KAIIDSYKLM HSHIHP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	129.69897
Match:	PF03006
Description:	Haemolysin-III related

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits