YRC Public Data Repository - Protein Structure Prediction

Protein:	VPS60
Organism:	Saccharomyces cerevisiae
Length:	262 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS60.

Description	E-value	Query Range	Subject Range
CE06928 - WBGene00016497 status:Predicted TR:Q22916 protein_id:AAC25860.1	2.0E-33	[25..252]	[40..256]
gi\|4680707 - gi\|4680707\|gb\|AAD27743.1\|AF132968_1 CGI-34 protein [Homo sapiens]	3.0E-33	[34..248]	[1..197]
CHMP5_MOUSE - Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=1 SV=1 CHMP5_RAT - Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5 PE=2 SV=1	1.0E-32	[34..248]	[1..198]
gi\|9758460, gi\|2... - gi\|9758460\|dbj\|BAB08989.1\| unnamed protein product [Arabidopsis thaliana], gi\|23296841\|gb\|AAN13183.1...	3.0E-32	[34..235]	[1..190]
CG6259-PA, FBpp0... - This gene is referred to in FlyBase by the symbol Dmel\CG6259 (CG6259, FBgn0036740). It is a protein... gi\|220948198, gi... - gi\|220957426\|gb\|ACL91256.1\| CG6259-PA [synthetic construct], gi\|220948198\|gb\|ACL86642.1\| CG6259-PA [...	1.0E-29	[34..251]	[1..201]
gi\|125524063 - gi\|125524063\|gb\|EAY72177.1\| hypothetical protein OsI_00027 [Oryza sativa Indica Group] gi\|215766133, gi... - gi\|55769667\|ref\|XP_549823.1\| putative CGI-34 protein [Oryza sativa (japonica cultivar-group)], gi\|52... gi\|55769667 - ref\|XP_549823.1\| putative CGI-34 protein [Oryza sativa (japonica cultivar-group)]	5.0E-27	[34..236]	[1..196]

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Predicted Domain #1

Region A:
Residues: [1-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFLAREKVH LKKVVIGGSQ DWLKHSYKLF KAIMNRIFGY GNKKSHDQLL QESNQSMNQA  60
   61 QQSLSNRISQ LDTQIAQLNF QLQNIQKNLQ RSNNKQPSLR KQALKILNKR KQLENMKDSL 120
  121 DSQSWSMTQA QLTNDNLQNT MITINALKQT NNAMKAQYGK INIDKLQDMQ DEMLDLIEQG 180
  181 DELQEVLAMN NNSGELDDIS DAELDAELDA LAQEDFTLPT SENSLGNDMP SYLLGANAPP 240
  241 AFIDEEPNLD TEDKNKALES AQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.30103
Match:	1i84S_
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits