| Protein: | VPS72 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 810 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS72.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-55 | [185..632] | [530..996] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MNTNRSETEA NSQCTMSDEG ADKSLDTNTE FIIQTRSRRS NAGNKLQKLL EQELRDIEST 60
61 KRQISSYKNG NDDEEDEIGL LFQEDEDDED FEMMAK
|
| Detection Method: |  |
| Confidence: | 7.73 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [97-175] |
1 11 21 31 41 51
| | | | | |
1 DDDDEGEEKE DETQSIRKEP SQASSEQAAD DLMFSSSESE DSSNENDEDA EEKEIRRQEL 60
61 LSRKKRNKRL QKGPVVIKK
|
| Detection Method: | |
| Confidence: | 7.73 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [176-245] |
1 11 21 31 41 51
| | | | | |
1 QKPKPKSGEA IPRSHHTHEQ LNAETLLLNT RRTSKRSSVM ENTMKVYEKL SKAEKKRKII 60
61 QERIRKHKEQ
|
| Detection Method: | |
| Confidence: | 7.73 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [246-321] |
1 11 21 31 41 51
| | | | | |
1 ESQHMLTQEE RLRIAKETEK LNILSLDKFK EQEVWKKENR LALQKRQKQK FQPNETILQF 60
61 LSTAWLMTPA MELEDR
|
| Detection Method: | |
| Confidence: | 7.73 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [322-405] |
1 11 21 31 41 51
| | | | | |
1 KYWQEQLNKR DKKKKKYPRK PKKNLNLGKQ DASDDKKRES EESIKNDGDV NSLGENSSSV 60
61 HNQKRIEETS TNDTVEGESS PDAA
|
| Detection Method: | |
| Confidence: | 14.05 |
| Match: | 1ldvA |
| Description: | No description for 1ldvA was found. |
|
Region A: Residues: [406-738] |
1 11 21 31 41 51
| | | | | |
1 VSRVNSDELK PTALPDVTLD AIANKQSTVD EAPNSQPQKN IITNEQKITN VGEPIQNLHN 60
61 EEIKDEMVSA LESRENTFEN SSPAAQVVSQ RDNSATPTPS NSTGTEDTIL ISPDTDIKGE 120
121 PEPCLKTEGI ENLSHNVPQE TKSNTDVSFL KQVTFTDHPQ VAIIDTEESP SKKDTANVDE 180
181 SSAENSLSTQ TYEGPEQLTS RNFVTLYDFP NAPPNLKDFN TNLFGDRWSY TNGLSATQRP 240
241 QDMKTVFHSI LPSPPQSSVP SPTVDISLDL SALANFPSFG EYDKKIVHQI NTEINKDLEI 300
301 KIKTQPPTGV FLANGIRKKC LITNKECQYF DPR
|
| Detection Method: | |
| Confidence: | 7.45 |
| Match: | 1ei3A |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [739-810] |
1 11 21 31 41 51
| | | | | |
1 TGVPYSDVEA YKIIQRIQDP ISKEEGRSDI KRDETTNEDS DDQVRFKWFG FKNGGIYLDL 60
61 SQRPAKGVPE GF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.286 | d.40.1 | CI-2 family of serine protease inhibitors |
| View | Download | 0.219 | d.88.1 | SRF-like |
| View | Download | 0.232 | d.71.1 | Cell division protein MinE topological specificity domain |
| View | Download | 0.393 | d.230.1 | N-terminal, heterodimerisation domain of RBP4 (RpoE) |
| View | Download | 0.344 | b.49.1 | N-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.215 | d.129.2 | Phosphoglucomutase, C-terminal domain |
| View | Download | 0.212 | d.52.1 | Alpha-lytic protease prodomain |
