YRC Public Data Repository - Protein Structure Prediction

Protein:	CWC21
Organism:	Saccharomyces cerevisiae
Length:	135 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CWC21.

Description	E-value	Query Range	Subject Range
CWC21_ASHGO - Pre-mRNA-splicing factor CWC21 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL... CWC21_ASHGO - Pre-mRNA-splicing factor CWC21 OS=Ashbya gossypii GN=CWC21 PE=3 SV=1	82.0	[0..1]	[126..1]
gi\|49641108 - gi\|49641108\|emb\|CAH02369.1\| KLLA0B10054p [Kluyveromyces lactis] gi\|49641108, gi\|... - gi\|50304053\|ref\|XP_451976.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641108\|emb\|CAH0236...	81.0	[0..1]	[115..39]
CWC21_CANGA - Pre-mRNA-splicing factor CWC21 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 062... CWC21_CANGA - Pre-mRNA-splicing factor CWC21 OS=Candida glabrata GN=CWC21 PE=3 SV=1	71.0	[0..5]	[122..4]
CWC21_KLULA - Pre-mRNA-splicing factor CWC21 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NB... CWC21_KLULA - Pre-mRNA-splicing factor CWC21 OS=Kluyveromyces lactis GN=CWC21 PE=3 SV=2	70.0	[0..1]	[115..1]
gi\|72124562, gi\|... - gi\|72124562\|ref\|XP_789188.1\| PREDICTED: similar to LOC445830 protein [Strongylocentrotus purpuratus]...	61.0	[0..3]	[128..2]
gi\|110755146 - gi\|110755146\|ref\|XP_001121772.1\| PREDICTED: similar to CG7971-PC, isoform C [Apis mellifera]	61.0	[0..3]	[106..2]
gi\|67540832, gi\|... - gi\|67540832\|ref\|XP_664190.1\| hypothetical protein AN6586.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	57.0	[0..1]	[114..1]
CWC21_DEBHA - Pre-mRNA-splicing factor CWC21 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NB... CWC21_DEBHA - Pre-mRNA-splicing factor CWC21 OS=Debaryomyces hansenii GN=CWC21 PE=3 SV=1	56.0	[0..1]	[119..1]
CWC21_USTMA - Pre-mRNA-splicing factor CWC21 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CWC21 PE=3 SV=1 CWC21_USTMA - Pre-mRNA-splicing factor CWC21 OS=Ustilago maydis GN=CWC21 PE=3 SV=1	55.0	[0..3]	[134..2]
CWC21_CRYNJ - Pre-mRNA-splicing factor CWC21 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 /... CWC21_CRYNB - Pre-mRNA-splicing factor CWC21 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A... CWC21_CRYNE - Pre-mRNA-splicing factor CWC21 OS=Cryptococcus neoformans GN=CWC21 PE=3 SV=1	49.0	[0..3]	[112..2]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYNGIGLKS AKGSSTSGHV QRSLASNNRR RPQGSQQQRQ QRQNAIKKAS HDKASRPLAV  60
   61 QKQIETHMEK REIEVQVSEL RDRLEEEETL SEEQIDKKCE ALRAKLTNEW QEQQRMSSLY 120
  121 TPRKARLTEE QHRHE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.14
Match:	2e62A
Description:	No description for 2e62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits