| Protein: | SNF1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 633 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNF1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..633] | [1..633] |
|
|
0.0 | [18..633] | [2..611] |
|
|
0.0 | [22..633] | [2..602] |
|
|
0.0 | [5..632] | [2..619] |
|
|
0.0 | [3..632] | [2..618] |
|
|
0.0 | [2..492] | [25..519] |
|
|
0.0 | [2..516] | [20..548] |
|
Region A: Residues: [1-137] |
1 11 21 31 41 51
| | | | | |
1 MSSNNNTNTA PANANSSHHH HHHHHHHHHH GHGGSNSTLN NPKSSLADGA HIGNYQIVKT 60
61 LGEGSFGKVK LAYHTTTGQK VALKIINKKV LAKSDMQGRI EREISYLRLL RHPHIIKLYD 120
121 VIKSKDEIIM VIEYAGN
|
|
Region B: Residues: [330-337] |
1 11 21 31 41 51
| | | | | |
1 NDSKKDGS
|
| Detection Method: |  |
| Confidence: | 525.373389 |
| Match: | 1a06__ |
| Description: | Calmodulin-dependent protein kinase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [138-329] |
1 11 21 31 41 51
| | | | | |
1 ELFDYIVQRD KMSEQEARRF FQQIISAVEY CHRHKIVHRD LKPENLLLDE HLNVKIADFG 60
61 LSNIMTDGNF LKTSCGSPNY AAPEVISGKL YAGPEVDVWS CGVILYVMLC RRLPFDDESI 120
121 PVLFKNISNG VYTLPKFLSP GAAGLIKRML IVNPLNRISI HEIMQDDWFK VDLPEYLLPP 180
181 DLKPHPEEEN EN
|
| Detection Method: | |
| Confidence: | 525.373389 |
| Match: | 1a06__ |
| Description: | Calmodulin-dependent protein kinase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [338-420] |
1 11 21 31 41 51
| | | | | |
1 SPDNDEIDDN LVNILSSTMG YEKDEIYESL ESSEDTPAFN EIRDAYMLIK ENKSLIKDMK 60
61 ANKSVSDELD TFLSQSPPTF QQQ
|
| Detection Method: | |
| Confidence: | 12.221849 |
| Match: | 1ahr__ |
| Description: | Calmodulin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [421-499] |
1 11 21 31 41 51
| | | | | |
1 SKSHQKSQVD HETAKQHARR MASAITQQRT YHQSPFMDQY KEEDSTVSIL PTSLPQIHRA 60
61 NMLAQGSPAA SKISPLVTK
|
| Detection Method: | |
| Confidence: | 12.221849 |
| Match: | 1ahr__ |
| Description: | Calmodulin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [500-633] |
1 11 21 31 41 51
| | | | | |
1 KSKTRWHFGI RSRSYPLDVM GEIYIALKNL GAEWAKPSEE DLWTIKLRWK YDIGNKTNTN 60
61 EKIPDLMKMV IQLFQIETNN YLVDFKFDGW ESSYGDDTTV SNISEDEMST FSAYPFLHLT 120
121 TKLIMELAVN SQSN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.527 | d.20.1 | UBC-like |
| View | Download | 0.484 | c.23.13 | Type II 3-dehydroquinate dehydratase |
| View | Download | 0.484 | d.233.1 | Inhibitor of vertebrate lysozyme, Ivy |
| View | Download | 0.462 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.427 | d.20.1 | UBC-like |
| View | Download | 0.426 | c.23.5 | Flavoproteins |
| View | Download | 0.357 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.354 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.348 | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.337 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.336 | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.317 | d.20.1 | UBC-like |
| View | Download | 0.315 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.314 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.306 | c.23.6 | Cobalamin (vitamin B12)-binding domain |
| View | Download | 0.297 | a.1.1 | Globin-like |
| View | Download | 0.295 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.290 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.268 | c.52.1 | Restriction endonuclease-like |
| View | Download | 0.262 | d.58.22 | TRADD, N-terminal domain |
| View | Download | 0.262 | d.199.1 | DNA-binding C-terminal domain of the transcription factor MotA |
| View | Download | 0.249 | c.116.1 | alpha/beta knot |
| View | Download | 0.247 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.243 | c.23.5 | Flavoproteins |
| View | Download | 0.240 | a.1.1 | Globin-like |
| View | Download | 0.232 | c.51.3 | B12-dependend dehydatases associated subunit |
| View | Download | 0.232 | b.1.2 | Fibronectin type III |
| View | Download | 0.219 | c.116.1 | alpha/beta knot |
| View | Download | 0.207 | a.26.1 | 4-helical cytokines |
| View | Download | 0.204 | d.58.7 | RNA-binding domain, RBD |
