YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL28
Organism:	Saccharomyces cerevisiae
Length:	147 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL28.

Description	E-value	Query Range	Subject Range
gi\|50305817, gi\|... - gi\|50305817\|ref\|XP_452869.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642002\|emb\|CAH0172... gi\|49642002 - gi\|49642002\|emb\|CAH01720.1\| KLLA0C14927p [Kluyveromyces lactis]	158.0	[0..11]	[147..9]
gi\|50292137, gi\|... - gi\|50292137\|ref\|XP_448501.1\| unnamed protein product [Candida glabrata], gi\|49527813\|emb\|CAG61462.1\|... gi\|49527813 - gi\|49527813\|emb\|CAG61462.1\| unnamed protein product [Candida glabrata]	151.0	[0..1]	[147..1]
gi\|44985056 - gi\|44985056\|gb\|AAS53834.1\| AFR463Cp [Ashbya gossypii ATCC 10895] gi\|45198981, gi\|... - gi\|45198981\|ref\|NP_986010.1\| AFR463Cp [Ashbya gossypii ATCC 10895], gi\|44985056\|gb\|AAS53834.1\| AFR46...	151.0	[0..23]	[146..18]
gi\|20086302 - gi\|20086302\|gb\|AAM08094.1\| mitochondrial ribosomal protein MRPL28 [Candida glabrata]	150.0	[0..1]	[147..1]
mrpl28 - mitochondrial ribosomal protein subunit L28 tr\|V9HW86\|V9HW86... - Epididymis luminal protein 251 OS=Homo sapiens GN=HEL-251 PE=2 SV=1 RM28_SCHPO - 54S ribosomal protein L28, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=m...	145.0	[0..54]	[137..31]
gi\|49657819 - gi\|49657819\|emb\|CAG90635.1\| DEHA2G14014p [Debaryomyces hansenii] gi\|50427085, gi\|... - gi\|50427085\|ref\|XP_462149.1\| hypothetical protein DEHA0G14883g [Debaryomyces hansenii CBS767], gi\|49...	126.0	[0..28]	[147..20]
gi\|238878727 - gi\|238878727\|gb\|EEQ42365.1\| 60S ribosomal protein L28, mitochondrial precursor [Candida albicans WO-... gi\|68488461, gi\|... - gi\|68488520\|ref\|XP_711885.1\| likely mitochondrial ribosomal protein MRPL28p [Candida albicans SC5314... orf19.8027, orf1... - orf19.397 CGDID:CAL0004959 Assembly 19, Contig19-10051 (25996, 25553) CDS, reverse complemented, tra...	119.0	[0..23]	[145..18]
gi\|49647772 - gi\|49647772\|emb\|CAG82225.1\| YALI0C16478p [Yarrowia lipolytica] gi\|50548871, gi\|... - gi\|50548871\|ref\|XP_501905.1\| YALI0C16478p [Yarrowia lipolytica], gi\|49647772\|emb\|CAG82225.1\| unnamed...	109.0	[0..24]	[146..102]
gi\|83767608 - gi\|83767608\|dbj\|BAE57747.1\| unnamed protein product [Aspergillus oryzae] gi\|169770559 - gi\|169770559\|ref\|XP_001819749.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238487020, gi... - gi\|238487020\|ref\|XP_002374748.1\| conserved hypothetical protein [Aspergillus flavus NRRL3357], gi\|22...	59.0	[0..1]	[147..36]
gi\|70999738, gi\|... - gi\|70999738\|ref\|XP_754586.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668522...	58.0	[0..56]	[147..93]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAQTFKKPH RAVLEQVSGT TVFIRNKRTK SKSSLSPLAQ RVVTQLSVMS ASRKQPKLLK  60
   61 LAREDLIKHQ TIEKCWSIYQ QQQRERRNLQ LELQYKSIER SMNLLQELSP RLFEAANASE 120
  121 KGKRFPMEMK VPTDFPPNTL WHYNFRK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.633	a.7.4	Smac/diablo
View	Download	0.633	a.7.4	Smac/diablo
View	Download	0.583	a.238.1	Description not found.
View	Download	0.572	a.7.4	Smac/diablo
View	Download	0.572	a.7.4	Smac/diablo
View	Download	0.445	c.25.1	Ferredoxin reductase-like, C-terminal NADP-linked domain
View	Download	0.435	a.216.1	Description not found.
View	Download	0.262	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.220	a.47.2	t-snare proteins
View	Download	0.218	f.25.1	Cytochrome c oxidase subunit III-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits