| Protein: | PFA5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 374 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PFA5.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-85 | [1..374] | [1..374] |
|
|
4.0E-76 | [3..366] | [24..395] |
|
|
5.0E-61 | [10..352] | [15..326] |
|
|
1.0E-60 | [1..331] | [1..300] |
|
|
3.0E-58 | [1..334] | [1..301] |
|
Region A: Residues: [1-101] |
1 11 21 31 41 51
| | | | | |
1 MALSWNIRIR RRSWFRFILP IIVLGLLCYG TWAYCHKLCY EQVDKRLRQK SVSVGLICAV 60
61 CFLDVVVIFI WLQIVILVGP GTQPHVAPFL ILPIASEEKT S
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.881 | 0.000 | zinc ion binding | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.817 | 0.000 | zinc ion binding | a.130.1 | Chorismate mutase II |
| View | Download | 0.882 | 0.000 | zinc ion binding | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.869 | 0.000 | zinc ion binding | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.837 | 0.000 | zinc ion binding | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
|
Region A: Residues: [102-207] |
1 11 21 31 41 51
| | | | | |
1 NTSQNTSVEY DAVVPPKCYQ SDPHGYPIWC SECQSLKMER THHSSELGHC IPRFDHYCMW 60
61 IGTVIGRDNY RLFVQFAAYF STLLLIMWVS ICVYIRIITQ HNHNYS
|
| Detection Method: | |
| Confidence: | 33.420216 |
| Match: | PF01529 |
| Description: | DHHC zinc finger domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [208-374] |
1 11 21 31 41 51
| | | | | |
1 PNLNANIIST LVFAILGWLL TASLLASSIF YMSQNKTSLE AIIDSKRKKF GTRKIFCYYS 60
61 EANKLRFVVE FDRSEFHSFW DKKSILANIK DFMGSNILMW IIPLGKPYTS RCKSDGKSGS 120
121 KTTLVEILGP YEETLSDYTI QAIEDKISRG EYLATLRASG DDSDPAY
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.517 | a.39.1 | EF-hand |
| View | Download | 0.447 | d.58.16 | Poly(A) polymerase, C-terminal domain |
| View | Download | 0.439 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.424 | c.36.1 | Thiamin diphosphate-binding fold (THDP-binding) |
| View | Download | 0.414 | d.38.1 | Thioesterase/thiol ester dehydrase-isomerase |
