| Protein: | SSN2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1420 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSN2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1420] | [1..1420] |
|
|
0.002 | [398..680] | [3925..4194] |
|
Region A: Residues: [1-1420] |
1 11 21 31 41 51
| | | | | |
1 MSSDASTYRL EDVLSSFYRV EKIKKINYHQ YISKAQNDQW SIQMEFMLRK QDPKTLVALL 60
61 SRDLWCFSIN DDPVPTPPAI EHKPVSPDKI GTFTADYSKP NLPPHYALFL KALRRKIYIN 120
121 LALGSHNKLI QFGNACISLS GVPNYLVQLE PHLFVNGDLT VSLCAKNMGL VPMKEENLEE 180
181 SFLSKHALYL APSGIRMHLA PASKQGYLIT PPKHTELLLT TLSVSHGINL QNKKNLKWVA 240
241 VVPDLGHLNG HTPTIASYLT PLLEAKKLVW PLHLIFAQPV ADIENSTSGD PSEFHCLQDA 300
301 LDAIDDFIQL KQTAAYRTPG SSGVLSSNIA GTNPLSSDGA YTEQFQHYKN NSISSQPASY 360
361 HSVQETNKIS PKDFSPNFTG IDKLMLSPSD QFAPAFLNTP NNNINENELF NDRKQTTVSN 420
421 DLENSPLKTE LEANGRSLEK VNNSVSKTGS VDTLHNKEGT LEQREQNENL PSDKSDSMVD 480
481 KELFGEDEDE DLFGDSNKSN STNESNKSIS DEITEDMFEM SDEEENNNNK SINKNNKEMH 540
541 TDLGKDIPFF PSSEKPNIRT MSGTTKRLNG KRKYLDIPID EMTLPTSPLY MDPGAPLPVE 600
601 TPRDRRKSVF APLNFNPIIE NNVDNKYKSG GKFSFSPLQK EEALNFDISM ADLSSSEEEE 660
661 DEEENGSSDE DLKSLNVRDD MKPSDNISTN TNIHEPQYIN YSSIPSLQDS IIKQENFNSV 720
721 NDANITSNKE GFNSIWKIPQ NDIPQTESPL KTVDSSIQPI ESNIKMTLED NNVTSNPSEF 780
781 TPNMVNSEIS NLPKDKSGIP EFTPADPNLS FESSSSLPFL LRHMPLASIP DIFITPTPVV 840
841 TISEKEQDIL DLIAEQVVTD YNILGNLGIP KIAYRGVKDC QEGLITTTML QLFSTFDRLN 900
901 GNDTISKFYN MKQPYVFVKK HHELIKVKHD SQPFIKFLNF RPPNGIKNFK SLLLSSSFKE 960
961 DCLSFAPTLS QTYINQELGF CELLKLTNED PPGLMYLKAF DKNKLLLLAA QIVSYCSNNK1020
1021 NSIKNVPPIL IILPLDNATL TELVDKANIF QVIKNEVCAK MPNIELYLKV IPMDFIRNVL1080
1081 VTVDQYVNVA ISIYNMLPPK SVKFTHIAHT LPEKVNFRTM QQQQMQQQQQ QQQQQQNNST1140
1141 GSSSIIYYDS YIHLAYSRSV DKEWVFAALS DSYGQGSMTK TWYVGNSRGK FDDACNQIWN1200
1201 IALNLASKKF GKICLILTRL NGILPDDELM NWRRLSGRNI HLAVVCVDDN SKISFIDEDK1260
1261 LYPSFKPIYK DTRFGGRMDM TRLYDYEIRD IDQDIHGIVF QHPFPLAHSQ HRCAIRSGAL1320
1321 IKFKKCDGDT VWDKFAVNLL NCPHSDSTQL LETILEEFRN LAALNVWYGL SDGEDGHIPW1380
1381 HILAVKKMMN TLVHTRVKIA NTSAATVHTA TSSSIILSDK
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [279-681] |
1 11 21 31 41 51
| | | | | |
1 PVADIENSTS GDPSEFHCLQ DALDAIDDFI QLKQTAAYRT PGSSGVLSSN IAGTNPLSSD 60
61 GAYTEQFQHY KNNSISSQPA SYHSVQETNK ISPKDFSPNF TGIDKLMLSP SDQFAPAFLN 120
121 TPNNNINENE LFNDRKQTTV SNDLENSPLK TELEANGRSL EKVNNSVSKT GSVDTLHNKE 180
181 GTLEQREQNE NLPSDKSDSM VDKELFGEDE DEDLFGDSNK SNSTNESNKS ISDEITEDMF 240
241 EMSDEEENNN NKSINKNNKE MHTDLGKDIP FFPSSEKPNI RTMSGTTKRL NGKRKYLDIP 300
301 IDEMTLPTSP LYMDPGAPLP VETPRDRRKS VFAPLNFNPI IENNVDNKYK SGGKFSFSPL 360
361 QKEEALNFDI SMADLSSSEE EEDEEENGSS DEDLKSLNVR DDM
|
| Detection Method: | |
| Confidence: | 1.01 |
| Match: | 1dv4A |
| Description: | 30S subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [682-791] |
1 11 21 31 41 51
| | | | | |
1 KPSDNISTNT NIHEPQYINY SSIPSLQDSI IKQENFNSVN DANITSNKEG FNSIWKIPQN 60
61 DIPQTESPLK TVDSSIQPIE SNIKMTLEDN NVTSNPSEFT PNMVNSEISN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [792-1026] |
1 11 21 31 41 51
| | | | | |
1 LPKDKSGIPE FTPADPNLSF ESSSSLPFLL RHMPLASIPD IFITPTPVVT ISEKEQDILD 60
61 LIAEQVVTDY NILGNLGIPK IAYRGVKDCQ EGLITTTMLQ LFSTFDRLNG NDTISKFYNM 120
121 KQPYVFVKKH HELIKVKHDS QPFIKFLNFR PPNGIKNFKS LLLSSSFKED CLSFAPTLSQ 180
181 TYINQELGFC ELLKLTNEDP PGLMYLKAFD KNKLLLLAAQ IVSYCSNNKN SIKNV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1027-1249] |
1 11 21 31 41 51
| | | | | |
1 PPILIILPLD NATLTELVDK ANIFQVIKNE VCAKMPNIEL YLKVIPMDFI RNVLVTVDQY 60
61 VNVAISIYNM LPPKSVKFTH IAHTLPEKVN FRTMQQQQMQ QQQQQQQQQQ NNSTGSSSII 120
121 YYDSYIHLAY SRSVDKEWVF AALSDSYGQG SMTKTWYVGN SRGKFDDACN QIWNIALNLA 180
181 SKKFGKICLI LTRLNGILPD DELMNWRRLS GRNIHLAVVC VDD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1250-1420] |
1 11 21 31 41 51
| | | | | |
1 NSKISFIDED KLYPSFKPIY KDTRFGGRMD MTRLYDYEIR DIDQDIHGIV FQHPFPLAHS 60
61 QHRCAIRSGA LIKFKKCDGD TVWDKFAVNL LNCPHSDSTQ LLETILEEFR NLAALNVWYG 120
121 LSDGEDGHIP WHILAVKKMM NTLVHTRVKI ANTSAATVHT ATSSSIILSD K
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
