YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL12B, RPL12A
Organism:	Saccharomyces cerevisiae
Length:	165 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL12B, RPL12A.

Description	E-value	Query Range	Subject Range
gi\|114618815 - gi\|114618815\|ref\|XP_001137362.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] gi\|194033612 - gi\|194033612\|ref\|XP_001926610.1\| PREDICTED: ribosomal protein L12 [Sus scrofa] RPL12 - ribosomal protein L12 gi\|60654803 - gi\|60654803\|gb\|AAX31966.1\| ribosomal protein L12 [synthetic construct] RL12_CANLF - 60S ribosomal protein L12 OS=Canis lupus familiaris GN=RPL12 PE=1 SV=1 ENSCJAT000000436... - null, null RL12_BOVIN - 60S ribosomal protein L12 OS=Bos taurus GN=RPL12 PE=2 SV=1 HGNC:10302\|MIM:1... - protein L12	6.0E-67	[1..163]	[1..163]
RL12_MOUSE - 60S ribosomal protein L12 OS=Mus musculus GN=Rpl12 PE=1 SV=2 gi\|51858795 - gb\|AAH82199.1\| MGC98766 protein [Xenopus laevis]	6.0E-67	[1..163]	[1..163]
RL12_RAT - 60S ribosomal protein L12 OS=Rattus norvegicus GN=Rpl12 PE=2 SV=1 gi\|57680 - gi\|57680\|emb\|CAA37581.1\| unnamed protein product [Rattus rattus]	7.0E-67	[1..163]	[1..163]
gi\|15293891 - gi\|15293891\|gb\|AAK95138.1\|AF401566_1 ribosomal protein L12 [Ictalurus punctatus]	3.0E-60	[1..162]	[1..162]
gi\|220960156 - gi\|220960156\|gb\|ACL92614.1\| RpL12-PA [synthetic construct] RpL12-PB, RpL12-... - The gene Ribosomal protein L12 is referred to in FlyBase by the symbol Dmel\RpL12 (CG3195, FBgn00349... gi\|38047863, gi\|... - gi\|38047863\|gb\|AAR09834.1\| similar to Drosophila melanogaster CG3195 [Drosophila yakuba], gi\|1954894... gi\|195341814, gi... - gi\|195341814\|ref\|XP_002037500.1\| GM18298 [Drosophila sechellia], gi\|194132350\|gb\|EDW53918.1\| GM18298... gi\|194194926, gi... - gi\|195586303\|ref\|XP_002082917.1\| GD11830 [Drosophila simulans], gi\|194194926\|gb\|EDX08502.1\| GD11830 ... gi\|194886059, gi... - gi\|194886059\|ref\|XP_001976541.1\| GG22931 [Drosophila erecta], gi\|190659728\|gb\|EDV56941.1\| GG22931 [D...	1.0E-59	[1..163]	[1..163]
gi\|16566713 - gi\|16566713\|gb\|AAL26576.1\|AF429974_1 ribosomal protein L12 [Spodoptera frugiperda]	5.0E-58	[1..164]	[1..164]
RL12B_SCHPO, RL1... - 60S ribosomal protein L12-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1202 PE=3 S... rpl1201, rpl1202 - 60S ribosomal protein L12.1 /L12A, 60S ribosomal protein L12.1 /L12A	3.0E-56	[1..164]	[1..164]
gi\|7635738 - gi\|7635738\|emb\|CAB88388.1\| L12 ribosomal protein [Hydra vulgaris] gi\|221114780 - gi\|221114780\|ref\|XP_002162146.1\| PREDICTED: similar to L12 ribosomal protein [Hydra magnipapillata]	3.0E-55	[1..164]	[1..164]
RL121_ARATH - 60S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A PE=2 SV=2	3.0E-55	[1..165]	[1..166]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKFDPNEV KYLYLRAVGG EVGASAALAP KIGPLGLSPK KVGEDIAKAT KEFKGIKVTV  60
   61 QLKIQNRQAA ASVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	654.68867
Match:	1k5yK_
Description:	No description for 1k5yK_ was found.

Predicted Domain #2

Region A:
Residues: [75-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSASSLVITA LKEPPRDRKK DKNVKHSGNI QLDEIIEIAR QMRDKSFGRT LASVTKEILG  60
   61 TAQSVGCRVD FKNPHDIIEG INAGEIEIPE N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	654.68867
Match:	1k5yK_
Description:	No description for 1k5yK_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits