| Protein: | RPT3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 428 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPT3.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..428] | [281..722] |
|
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0.0 | [1..428] | [278..708] |
|
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0.0 | [1..427] | [307..760] |
|
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0.0 | [1..399] | [278..676] |
|
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0.0 | [1..427] | [304..732] |
|
|
0.0 | [1..427] | [339..792] |
|
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0.0 | [1..427] | [211..667] |
|
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0.0 | [1..427] | [306..759] |
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0.0 | [1..427] | [307..758] |
|
Region A: Residues: [1-140] |
1 11 21 31 41 51
| | | | | |
1 MEELGIVTPV EKAVEEKPAV KSYASLLAQL NGTVNNNSAL SNVNSDIYFK LKKLEKEYEL 60
61 LTLQEDYIKD EQRHLKRELK RAQEEVKRIQ SVPLVIGQFL EPIDQNTGIV SSTTGMSYVV 120
121 RILSTLDREL LKPSMSVALH
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.636 | 0.011 | ubiquitin-dependent protein catabolic process | a.7.1 | Spectrin repeat |
| View | Download | 0.552 | 0.011 | ubiquitin-dependent protein catabolic process | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.531 | 0.008 | ubiquitin-dependent protein catabolic process | a.47.2 | t-snare proteins |
| View | Download | 0.600 | 0.007 | ubiquitin-dependent protein catabolic process | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.459 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.432 | N/A | N/A | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.404 | N/A | N/A | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.354 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.346 | N/A | N/A | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.335 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.311 | N/A | N/A | a.62.1 | Hepatitis B viral capsid (hbcag) |
| View | Download | 0.306 | N/A | N/A | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.295 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.286 | N/A | N/A | a.63.1 | Apolipophorin-III |
| View | Download | 0.281 | N/A | N/A | a.63.1 | Apolipophorin-III |
| View | Download | 0.280 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.265 | N/A | N/A | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.245 | N/A | N/A | f.25.1 | Cytochrome c oxidase subunit III-like |
| View | Download | 0.236 | N/A | N/A | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.225 | N/A | N/A | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.224 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.218 | N/A | N/A | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.215 | N/A | N/A | a.7.7 | BAG domain |
| View | Download | 0.214 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.211 | N/A | N/A | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.205 | N/A | N/A | a.24.1 | Apolipoprotein |
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Region A: Residues: [141-343] |
1 11 21 31 41 51
| | | | | |
1 RHSNALVDIL PPDSDSSISV MGENEKPDVT YADVGGLDMQ KQEIREAVEL PLVQADLYEQ 60
61 IGIDPPRGVL LYGPPGTGKT MLVKAVANST KAAFIRVNGS EFVHKYLGEG PRMVRDVFRL 120
121 ARENAPSIIF IDEVDSIATK RFDAQTGSDR EVQRILIELL TQMDGFDQST NVKVIMATNR 180
181 ADTLDPALLR PGRLDRKIEF PSL
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| Detection Method: | |
| Confidence: | 557.28043 |
| Match: | 1e32A_ |
| Description: | Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [344-428] |
1 11 21 31 41 51
| | | | | |
1 RDRRERRLIF GTIASKMSLA PEADLDSLII RNDSLSGAVI AAIMQEAGLR AVRKNRYVIL 60
61 QSDLEEAYAT QVKTDNTVDK FDFYK
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| Detection Method: | |
| Confidence: | 557.28043 |
| Match: | 1e32A_ |
| Description: | Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc |
| Matching Structure (courtesy of the PDB): |
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