YRC Public Data Repository - Protein Structure Prediction

Protein:	ATO3
Organism:	Saccharomyces cerevisiae
Length:	275 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATO3.

Description	E-value	Query Range	Subject Range
gi\|151942359 - gi\|151942359\|gb\|EDN60715.1\| ammonia (ammonium) transport outward [Saccharomyces cerevisiae YJM789] ATO3 - Plasma membrane protein, regulation pattern suggests a possible role in export of ammonia from the c... gi\|190404678 - gi\|190404678\|gb\|EDV07945.1\| transmembrane protein [Saccharomyces cerevisiae RM11-1a] ATO3_YEAST - Ammonia transport outward protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATO3...	1.0E-90	[1..275]	[1..275]
GPR1_YARLI - Glyoxylate pathway regulator OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GPR1 PE=1 SV=3 GPR1_YARLI - Glyoxylate pathway regulator OS=Yarrowia lipolytica GN=GPR1 PE=1 SV=3	1.0E-77	[46..272]	[41..265]
MUG86_SCHPO - Meiotically up-regulated gene 86 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=m... mug86 - acetate transporter	4.0E-62	[69..266]	[75..277]
gi\|108810505, gi... - gi\|229900694\|ref\|ZP_04515818.1\| conserved inner membrane protein associated with acetate transport [... gi\|22127581, gi\|... - gi\|22127581\|ref\|NP_671004.1\| hypothetical protein y3707 [Yersinia pestis KIM], gi\|21960688\|gb\|AAM872... gi\|25331232 - pir\|\|AH0057 probable membrane protein YPO0467 [imported] - Yersinia pestis (strain CO92) gi\|165936593, gi... - gi\|89102679\|ref\|ZP_01175295.1\| COG1584: Predicted membrane protein [Yersinia pestis biovar Orientali... gi\|165920813, gi... - gi\|165927351\|ref\|ZP_02223183.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Orientalis st... gi\|16120796, gi\|... - gi\|218927664\|ref\|YP_002345539.1\| hypothetical protein YPO0467 [Yersinia pestis CO92], gi\|16120796\|re... gi\|108810051, gi... - gi\|108810051\|ref\|YP_653967.1\| hypothetical protein YPA_4061 [Yersinia pestis Antiqua], gi\|108781964\|... gi\|152962063, gi... - gi\|77631596\|ref\|ZP_00794182.1\| COG1584: Predicted membrane protein [Yersinia pseudotuberculosis IP 3... gi\|149289905, gi... - gi\|150260497\|ref\|ZP_01917225.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149289905\|... gi\|145600419, gi... - gi\|145600419\|ref\|YP_001164495.1\| hypothetical protein YPDSF_3164 [Yersinia pestis Pestoides F], gi\|1... gi\|229836950, gi... - gi\|229836950\|ref\|ZP_04457115.1\| conserved inner membrane protein associated with acetate transport [... gi\|229840354, gi... - gi\|229840354\|ref\|ZP_04460513.1\| conserved inner membrane protein associated with acetate transport [... gi\|229842434, gi... - gi\|229842434\|ref\|ZP_04462589.1\| conserved inner membrane protein associated with acetate transport [... gi\|166211974, gi... - gi\|166211974\|ref\|ZP_02238009.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Antiqua str. ... gi\|165992017, gi... - gi\|166008678\|ref\|ZP_02229576.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Antiqua str. ... gi\|166963225, gi... - gi\|167419231\|ref\|ZP_02310984.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Orientalis st... gi\|167401655, gi... - gi\|167401655\|ref\|ZP_02307149.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Antiqua str. ... gi\|167468975 - gi\|167468975\|ref\|ZP_02333679.1\| gpr1/fun34/yaaH family protein [Yersinia pestis FV-1] gi\|167426051, gi... - gi\|167426051\|ref\|ZP_02317804.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Mediaevalis s... gi\|162421810, gi... - gi\|77635670\|ref\|ZP_00797752.1\| COG1584: Predicted membrane protein [Yersinia pestis Angola], gi\|1624... gi\|170025810, gi... - gi\|170025810\|ref\|YP_001722315.1\| hypothetical protein YPK_3595 [Yersinia pseudotuberculosis YPIII], ...	2.0E-48	[82..261]	[4..174]
Y215_METTH - Uncharacterized protein MTH_215 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1... gi\|3123045, gi\|7... - pir\|\|E69126 yaaH protein homolog MTH215 - Methanobacterium thermoautotrophicum (strain Delta H), gi...	8.0E-48	[81..261]	[16..197]
gi\|197752925, gi... - gi\|254285488\|ref\|ZP_04960452.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197752... gi\|229608634, gi... - gi\|229608634\|ref\|YP_002879282.1\| hypothetical protein VCD_003556 [Vibrio cholerae MJ-1236], gi\|22937... gi\|229333874, gi... - gi\|229530100\|ref\|ZP_04419490.1\| hypothetical protein VCG_003212 [Vibrio cholerae 12129(1)], gi\|22933... gi\|229338997, gi... - gi\|229525416\|ref\|ZP_04414821.1\| hypothetical protein VCA_003042 [Vibrio cholerae bv. albensis VL426]... gi\|229339771, gi... - gi\|229523408\|ref\|ZP_04412815.1\| hypothetical protein VIF_000268 [Vibrio cholerae TM 11079-80], gi\|22... gi\|229344549, gi... - gi\|229517834\|ref\|ZP_04407278.1\| hypothetical protein VCC_001858 [Vibrio cholerae RC9], gi\|229344549\|... gi\|229513091, gi... - gi\|229513091\|ref\|ZP_04402557.1\| hypothetical protein VCB_000736 [Vibrio cholerae TMA 21], gi\|2293499... gi\|229505616, gi... - gi\|229505616\|ref\|ZP_04395126.1\| hypothetical protein VCF_000827 [Vibrio cholerae BX 330286], gi\|2293... gi\|227008837, gi... - gi\|227080949\|ref\|YP_002809500.1\| putative Inner membrane protein [Vibrio cholerae M66-2], gi\|2270088... gi\|254847908, gi... - gi\|75831987\|ref\|ZP_00761246.1\| COG1584: Predicted membrane protein [Vibrio cholerae MO10], gi\|254847... gi\|227117144, gi... - gi\|75826119\|ref\|ZP_00755554.1\| COG1584: Predicted membrane protein [Vibrio cholerae O395], gi\|227117... gi\|125622420, gi... - gi\|75820924\|ref\|ZP_00750961.1\| COG1584: Predicted membrane protein [Vibrio cholerae V51], gi\|2542250... gi\|11354553 - pir\|\|F82282 conserved hypothetical protein VC0770 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|121631508, gi... - gi\|75815735\|ref\|ZP_00746230.1\| COG1584: Predicted membrane protein [Vibrio cholerae V52], gi\|1217260... gi\|121585675, gi... - gi\|121585675\|ref\|ZP_01675470.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215500... gi\|153217376, gi... - gi\|153217376\|ref\|ZP_01951127.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124113607\|... gi\|153824644, gi... - gi\|153824644\|ref\|ZP_01977311.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149741862... gi\|124123844, gi... - gi\|153800555\|ref\|ZP_01955141.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124123844... gi\|148876238, gi... - gi\|153828284\|ref\|ZP_01980951.1\| putative membrane protein [Vibrio cholerae 623-39], gi\|148876238\|gb\|... gi\|153817283, gi... - gi\|153817283\|ref\|ZP_01969950.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|15640789, gi\|... - gi\|9655217\|gb\|AAF93935.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|229350677, gi... - gi\|229510712\|ref\|ZP_04400191.1\| hypothetical protein VCE_002119 [Vibrio cholerae B33], gi\|229350677\|...	1.0E-46	[81..262]	[2..173]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSASSPQD LEKGVNTLEN IETLPQQGSI AGVSQGFPNI QEIYSDRDFI TLGSSTYRRR  60
   61 DLLNALDRGD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.641	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.402	a.28.1	ACP-like
View	Download	0.381	a.28.2	Colicin E immunity proteins
View	Download	0.376	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.362	a.4.1	Homeodomain-like
View	Download	0.320	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.312	a.4.1	Homeodomain-like
View	Download	0.305	a.64.2	Bacteriocin AS-48
View	Download	0.300	a.28.1	ACP-like
View	Download	0.276	a.4.1	Homeodomain-like
View	Download	0.273	a.65.1	Annexin
View	Download	0.251	a.44.1	Disulphide-bond formation facilitator (DSBA), insertion domain
View	Download	0.243	a.4.1	Homeodomain-like
View	Download	0.242	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.241	a.64.1	Saposin
View	Download	0.235	a.4.1	Homeodomain-like
View	Download	0.220	a.64.2	Bacteriocin AS-48
View	Download	0.205	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.203	a.64.2	Bacteriocin AS-48

Predicted Domain #2

Region A:
Residues: [71-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEEGNCAKYT PHQFANPVPL GLASFSLSCL VLSLINANVR GVTDGKWALS LFMFFGGAIE  60
   61 LFAGLLCFVI GDTYAMTVFS SFGGFWICYG YGLTDTDNLV SGYTDPTMLN NVIGFFLAGW 120
  121 TVFTFLMLMC TLKSTWGLFL LLTFLDLTFL LLCIGTFIDN NNLKMAGGYF GILSSCCGWY 180
  181 SLYCSVVSPS NSYLAFRAHT MPNAP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	35.468521
Match:	PF01184
Description:	GPR1/FUN34/yaaH family

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits