YRC Public Data Repository - Protein Structure Prediction

Protein:	RPP2B
Organism:	Saccharomyces cerevisiae
Length:	110 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPP2B.

Description	E-value	Query Range	Subject Range
gi\|39582094, gi\|... - gi\|39582094\|emb\|CAE63737.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae], gi\|187032828\|em... gi\|157747115 - gi\|157747115\|ref\|XP_001668652.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae AF16]	109.0	[0..1]	[110..1]
RLA2_BRUMA - 60S acidic ribosomal protein P2 OS=Brugia malayi GN=rpp-2 PE=3 SV=1	107.0	[0..1]	[110..2]
gi\|77416939 - gi\|77416939\|gb\|ABA81865.1\| unknown [Solanum tuberosum]	107.0	[0..1]	[73..1]
gi\|50800573 - gi\|50800573\|ref\|XP_424134.1\| PREDICTED: hypothetical protein [Gallus gallus]	106.0	[0..1]	[110..1]
gi\|56757219 - gi\|56757219\|gb\|AAW26781.1\| SJCHGC01207 protein [Schistosoma japonicum]	105.0	[0..1]	[110..1]
gi\|68397381 - gi\|68397381\|ref\|XP_686604.1\| PREDICTED: similar to 60S acidic ribosomal protein P2 [Danio rerio]	104.0	[0..1]	[110..158]
gi\|110765226, gi... - ref\|XP_392860.1\| similar to 60S acidic ribosomal protein P2 [Apis mellifera], gi\|110765226\|ref\|XP_00...	103.0	[0..1]	[110..1]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYLAAYLLL VQGGNAAPSA ADIKAVVESV GAEVDEARIN ELLSSLEGKG SLEEIIAEGQ  60
   61 KKFATVPTGG ASSAAAGAAG AAAGGDAAEE EKEEEAKEES DDDMGFGLFD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.49485
Match:	PF00428.10
Description:	No description for PF00428.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits