YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: YDR365W-A, YPL25...
Organism: Saccharomyces cerevisiae
Length: 440 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR365W-A, YPL25....

Description E-value Query
Range
Subject
Range
YGR161C-D - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
YG13B_YEAST - Transposon Ty1-GR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
576.0 [0..1] [435..1]

Back

Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQHS PISHGSACAS VTSKEVHTNQ DPLDVSASKT EECEKASTKA NSQQTTTPAS  60
   61 SAVPENPHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 120
  121 YFPPGPQSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DMTSTKKYVR PPPML

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.30103
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [176-333]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSPNDFPNWV KTYIKFLQNS NLGGIIPTVN GKPVRQITDD ELTFLYNTFQ IFAPSQFLPT  60
   61 WVKDILSVDY TDIMKILSKS IEKMQSDTQE ANDIVTLANL QYNGSTPADA FETKVTNIID 120
  121 RLNNNGIHIN NKVACQLIMR GLSGEYKFLR YTRHRHLN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [334-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVAELFLDI HAIYEEQQGS RNSKPNYRRN LSDEKNDSRS YTNTTKPKVI ARNPQKTNNS  60
   61 KSKTARAHNV STSNNSPSTD NDSISKSTTE PIQLNNKHDL HLRPGTY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.277 N/A N/A a.152.1 Antioxidant defence protein AhpD
View Download 0.271 N/A N/A a.47.2 t-snare proteins
View Download 0.241 N/A N/A a.79.1 Antitermination factor NusB
View Download 0.230 N/A N/A a.152.1 Antioxidant defence protein AhpD
View Download 0.221 N/A N/A a.22.1 Histone-fold


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle