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View Structure Prediction Details

Protein: YDR352W
Organism: Saccharomyces cerevisiae
Length: 317 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR352W.

Description E-value Query
Range
Subject
Range
gi|15235292, gi|... - pir||T04894 hypothetical protein F18F4.200 - Arabidopsis thaliana, gi|7268805|emb|CAB79010.1| putat...
305.0 [0..11] [297..6]
YPQ1_YEAST - Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288...
YOL092W - Putative protein of unknown function; predicted to contain six transmembrane domains and is 58% simi...
260.0 [0..26] [282..28]
CTNS_MOUSE - Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1
242.0 [0..14] [288..129]
gi|109112775 - gi|109112775|ref|XP_001089732.1| PREDICTED: cystinosis, nephropathic isoform 2 [Macaca mulatta]
242.0 [0..14] [288..129]
gi|109491251 - gi|109491251|ref|XP_001080248.1| PREDICTED: similar to Cystinosin [Rattus norvegicus]
240.0 [0..14] [288..154]

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Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCSNGIWPT VSNLCGSLSF FTSVISLFPQ IIETYRDKSV DGLSPYFLLA WLCGDITSLI  60
   61 GAKLTGQLLF QILLAIYFLL NDSFVCGQYY YYGVLHENKL ATVGHEPKPL LPELVENGEL 120
  121 LREEEDMIQG GSSAE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.975 N/A N/A a.24.9 alpha-catenin/vinculin
View Download 0.907 N/A N/A a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.890 N/A N/A a.24.9 alpha-catenin/vinculin
View Download 0.885 N/A N/A f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.885 N/A N/A f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.869 N/A N/A a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.831 N/A N/A a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.774 N/A N/A a.24.17 Group V grass pollen allergen
View Download 0.703 N/A N/A a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.690 N/A N/A f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore

Predicted Domain #2
Region A:
Residues: [136-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPRSSRRRSA ITAALAIAHT ISTASAYPLN VGSTQSQVGP PGDGKNSQLG TILSWIGASF  60
   61 YVGARIPQLI KNYNRKSTDG LSPFLFATTL LCNITYNLSI FTSCRFLDNQ NKREFIVNEL 120
  121 PFIFGSAGTI AFDLIYFYQY YILYATDMQL RELERELYSP EEDSAAQLVT ERTSLLSGET 180
  181 QT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle