YRC Public Data Repository - Protein Structure Prediction

Protein:	DAD4
Organism:	Saccharomyces cerevisiae
Length:	72 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAD4.

Description	E-value	Query Range	Subject Range
DAD4_CANGA - DASH complex subunit DAD4 OS=Candida glabrata GN=DAD4 PE=3 SV=1 DAD4_CANGA - DASH complex subunit DAD4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / N...	95.0	[0..1]	[72..2]
gi\|45201451, gi\|... - gi\|45201451\|ref\|NP_987021.1\| AGR355Cp [Ashbya gossypii ATCC 10895], gi\|44986385\|gb\|AAS54845.1\| AGR35... gi\|44986385 - gi\|44986385\|gb\|AAS54845.1\| AGR355Cp [Ashbya gossypii ATCC 10895]	92.0	[0..1]	[72..8]
DAD4_KLULA - DASH complex subunit DAD4 OS=Kluyveromyces lactis GN=DAD4 PE=3 SV=1 DAD4_KLULA - DASH complex subunit DAD4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 12...	88.0	[0..1]	[72..1]
gi\|46124023, gi\|... - gi\|46124023\|ref\|XP_386565.1\| hypothetical protein FG06389.1 [Gibberella zeae PH-1], gi\|42551750\|gb\|E...	66.0	[0..1]	[71..1]
DAD4_YARLI - DASH complex subunit DAD4 OS=Yarrowia lipolytica GN=DAD4 PE=3 SV=1 DAD4_YARLI - DASH complex subunit DAD4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=DAD4 PE=3 SV=1	57.0	[0..1]	[72..1]
DAD4_SCHPO - DASH complex subunit dad4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dad4 PE=1 SV=2 dad4 - DASH complex subunit Dad4	56.0	[0..1]	[72..1]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENPHEQVQA NILSRIIGNV KRLNESVAIL NQELVTINNR NKNLEIMGAI CDNYHSSVQF  60
   61 NLEATNNKKP PL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.154902
Match:	PF08650.1
Description:	No description for PF08650.1 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.675	N/A	N/A	d.58.7	RNA-binding domain, RBD
View	Download	0.661	N/A	N/A	d.47.1	Ribosomal protein L11, N-terminal domain
View	Download	0.661	N/A	N/A	d.58.17	Metal-binding domain
View	Download	0.644	N/A	N/A	d.81.1	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
View	Download	0.644	N/A	N/A	d.81.1	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
View	Download	0.641	N/A	N/A	d.129.6	Description not found.
View	Download	0.620	N/A	N/A	a.60.6	DNA polymerase beta, N-terminal domain-like
View	Download	0.609	N/A	N/A	d.373.1	Description not found.
View	Download	0.529	N/A	N/A	d.50.1	dsRNA-binding domain-like
View	Download	0.522	N/A	N/A	d.58.49	YajQ-like
View	Download	0.520	N/A	N/A	d.58.17	Metal-binding domain
View	Download	0.509	N/A	N/A	d.50.1	dsRNA-binding domain-like
View	Download	0.453	N/A	N/A	d.49.1	Signal recognition particle alu RNA binding heterodimer, SRP9/14
View	Download	0.391	N/A	N/A	d.71.1	Cell division protein MinE topological specificity domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits