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View Structure Prediction Details

Protein: SRB7
Organism: Saccharomyces cerevisiae
Length: 140 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRB7.

Description E-value Query
Range
Subject
Range
gi|25407290, gi|... - gi|7267236|emb|CAB80843.1| hypothetical protein [Arabidopsis thaliana], pir||B85060 hypothetical pro...
181.0 [0..3] [138..244]
gi|61680697, gi|... - gi|61680697|pdb|1YKE|D Chain D, Structure Of The Mediator Med7MED21 SUBCOMPLEX, gi|61680695|pdb|1YKE...
165.0 [0..1] [140..1]
gi|50729132 - gi|50729132|ref|XP_416442.1| PREDICTED: similar to SRB7 suppressor of RNA polymerase B homolog; RNA ...
153.0 [0..1] [139..191]
MED21_SCHPO - Mediator of RNA polymerase II transcription subunit 21 OS=Schizosaccharomyces pombe (strain 972 / AT...
srb7 - mediator complex subunit Srb7
153.0 [0..1] [129..1]
gi|55667209 - gi|55667209|ref|XP_520809.1| PREDICTED: SRB7 suppressor of RNA polymerase B homolog isoform 2 [Pan t...
138.0 [0..1] [139..1]
gi|1515377 - gi|1515377|gb|AAB06944.1| RNA polymerase II complex component SRB7 [Homo sapiens]
138.0 [0..1] [139..1]
MED21_MOUSE - Mediator of RNA polymerase II transcription subunit 21 OS=Mus musculus GN=Med21 PE=1 SV=1
137.0 [0..1] [139..1]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDRLTQLQI CLDQMTEQFC ATLNYIDKNH GFERLTVNEP QMSDKHATVV PPEEFSNTID  60
   61 ELSTDIILKT RQINKLIDSL PGVDVSAEEQ LRKIDMLQKK LVEVEDEKIE AIKKKEKLLR 120
  121 HVDSLIEDFV DGIANSKKST 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.39794
Match: 1ykeB
Description: Structure of the mediator MED7/MED21 subcomplex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle