YRC Public Data Repository - Protein Structure Prediction

Protein:	GPI11
Organism:	Saccharomyces cerevisiae
Length:	219 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPI11.

Description	E-value	Query Range	Subject Range
GPI11 - ER membrane protein involved in a late step of glycosylphosphatidylinositol (GPI) anchor assembly; i... GPI11_YEAST - Glycosylphosphatidylinositol anchor biosynthesis protein 11 OS=Saccharomyces cerevisiae (strain ATCC... gi\|151942274 - gi\|151942274\|gb\|EDN60630.1\| glycosylphosphatidylinositol anchor biosynthesis [Saccharomyces cerevisi... gi\|207346485 - gi\|207346485\|gb\|EDZ72968.1\| YDR302Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190404755 - gi\|190404755\|gb\|EDV08022.1\| glycosylphosphatidylinositol anchor biosynthesis protein 11 [Saccharomyc...	4.0E-74	[1..219]	[1..219]
gi\|123984437, gi... - gi\|123998401\|gb\|ABM86802.1\| phosphatidylinositol glycan anchor biosynthesis, class F [synthetic cons... PIGF - phosphatidylinositol glycan anchor biosynthesis, class F	1.0E-46	[44..215]	[26..202]
SPCC1450.15 - pig-F YCKF_SCHPO - Uncharacterized protein C1450.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1450....	6.0E-46	[44..216]	[321..499]
gi\|6587811, gi\|2... - gi\|6587811\|gb\|AAF18502.1\|AC010924_15 ESTs gb\|AI992787, gb\|T20398 come from this gene. [Arabidopsis t...	1.0E-45	[41..199]	[26..195]
PIGF_MOUSE - Phosphatidylinositol-glycan biosynthesis class F protein OS=Mus musculus GN=Pigf PE=1 SV=1	4.0E-44	[44..215]	[26..202]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-20	[122..209]	[18..123]

Back

Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAKKRTRKT VKKTVSFSDD TTLTTHQNRE KKNVDHDRPP VYVRKTPLMT FPYHLVALLY  60
   61 YYVFVSSNFN TVKLLSFLIP TQVAYLVLQF NKCTVYGNKI IKINYSLTII CLGVTFLLSF 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [121-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTMLLTILFG APLMDLLWET WLLSLHFAFL AYPAVYSVFN CDFKVGLWKK YFIFIVVGGW  60
   61 ISCVVIPLDW DRDWQNWPIP IVVGGYLGAL VGYTIGAYI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits