YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP5
Organism:	Saccharomyces cerevisiae
Length:	212 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP5.

Description	E-value	Query Range	Subject Range
ATPO_BOVIN - ATP synthase O subunit, mitochondrial precursor (EC 3.6.3.14) (Oligomycin sensitivity conferral prot...	3.0E-52	[7..212]	[13..213]
ATP5O - ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit gi\|55655775 - gi\|55655775\|ref\|XP_531443.1\| PREDICTED: mitochondrial ATP synthase, O subunit [Pan troglodytes]	4.0E-52	[7..212]	[13..213]
ATPO_IPOBA - ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1	8.0E-50	[3..212]	[38..242]
ATPO_MOUSE - ATP synthase subunit O, mitochondrial OS=Mus musculus GN=Atp5o PE=1 SV=1	9.0E-50	[7..212]	[13..213]
ATPO_RAT - ATP synthase subunit O, mitochondrial OS=Rattus norvegicus GN=Atp5o PE=1 SV=1	4.0E-49	[7..212]	[13..213]
gi\|913531 - gi\|913531\|gb\|AAB33087.1\| H+-ATPase subunit, OSCP=oligomysin sensitivity conferring protein [swine, h... gi\|1092696 - gi\|1092696\|prf\|\|2101191A oligomycin sensitivity conferring protein	6.0E-47	[18..212]	[1..190]
gi\|190404759 - gi\|190404759\|gb\|EDV08026.1\| ATP synthase subunit 5 [Saccharomyces cerevisiae RM11-1a] ATP5 - Subunit 5 of the stator stalk of mitochondrial F1F0 ATP synthase, which is an evolutionarily conserv... ATPO_YEAST - ATP synthase subunit 5, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AT... gi\|151942270 - gi\|151942270\|gb\|EDN60626.1\| F1F0 ATP synthase subunit 5 [Saccharomyces cerevisiae YJM789]	3.0E-46	[1..212]	[1..212]
ATPO_SCHPO - ATP synthase subunit 5, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atp5... atp5 - F0-ATPase delta subunit	5.0E-46	[3..212]	[2..216]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-45	[3..208]	[2..212]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNRVFTRSF ASSLRAAASK AAAPPPVRLF GVEGTYATAL YQAAAKNSSI DAAFQSLQKV  60
   61 ESTVKKNPKL GHLLLNPALS LKDRNSVIDA IVETHKNLDG YVVNLLKVLS ENNRLGCFEK 120
  121 IASDFGVLND AHNGLLKGTV TSAEPLDPKS FKRIEKALSA SKLVGQGKSL KLENVVKPEI 180
  181 KGGLIVELGD KTVDLSISTK IQKLNKVLED SI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.522879
Match:	1abv__
Description:	N-terminal domain of the delta subunit of the F1F0-ATP synthase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits