| Protein: | SSD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1250 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSD1.
| Description | E-value | Query Range |
Subject Range |
|
|
945.0 | [0..1] | [1246..1] |
|
|
916.0 | [0..21] | [1235..15] |
|
|
849.0 | [0..17] | [1246..3] |
|
|
845.0 | [0..100] | [1248..173] |
|
|
817.0 | [0..22] | [1248..9] |
|
|
803.0 | [0..17] | [1246..18] |
|
|
784.0 | [0..7] | [1249..2] |
|
|
778.0 | [0..337] | [1246..11] |
|
|
773.0 | [0..220] | [1246..9] |
|
Region A: Residues: [1-335] |
1 11 21 31 41 51
| | | | | |
1 MSKNSNVNNN RSQEPNNMFV QTTGGGKNAP KQIHVAHRRS QSELTNLMIE QFTLQKQLEQ 60
61 VQAQQQQLMA QQQQLAQQTG QYLSGNSGSN NHFTPQPPHP HYNSNGNSPG MSAGGSRSRT 120
121 HSRNNSGYYH NSYDNNNNSN NPGSNSHRKT SSQSSIYGHS RRHSLGLNEA KKAAAEEQAK 180
181 RISGGEAGVT VKIDSVQADS GSNSTTEQSD FKFPPPPNAH QGHRRATSNL SPPSFKFPPN 240
241 SHGDNDDEFI ATSSTHRRSK TRNNEYSPGI NSNWRNQSQQ PQQQLSPFRH RGSNSRDYNS 300
301 FNTLEPPAIF QQGHKHRASN SSVHSFSSQG NNNGG
|
| Detection Method: |  |
| Confidence: | 6.69897 |
| Match: | 1y0fA |
| Description: | No description for 1y0fA was found. |
|
Region A: Residues: [336-500] |
1 11 21 31 41 51
| | | | | |
1 GRKSLFAPYL PQANIPELIQ EGRLVAGILR VNKKNRSDAW VSTDGALDAD IYICGSKDRN 60
61 RALEGDLVAV ELLVVDDVWE SKKEKEEKKR RKDASMQHDL IPLNSSDDYH NDASVTAATS 120
121 NNFLSSPSSS DSLSKDDLSV RRKRSSTINN DSDSLSSPTK SGVRR
|
| Detection Method: | |
| Confidence: | 1.25 |
| Match: | 2ix1A |
| Description: | No description for 2ix1A was found. |
|
Region A: Residues: [501-1164] |
1 11 21 31 41 51
| | | | | |
1 RSSLKQRPTQ KKNDDVEVEG QSLLLVEEEE INDKYKPLYA GHVVAVLDRI PGQLFSGTLG 60
61 LLRPSQQANS DNNKPPQSPK IAWFKPTDKK VPLIAIPTEL APKDFVENAD KYSEKLFVAS 120
121 IKRWPITSLH PFGILVSELG DIHDPDTEID SILRDNNFLS NEYLDQKNPQ KEKPSFQPLP 180
181 LTAESLEYRR NFTDTNEYNI FAISELGWVS EFALHVRNNG NGTLELGCHV VDVTSHIEEG 240
241 SSVDRRARKR SSAVFMPQKL VNLLPQSFND ELSLAPGKES ATLSVVYTLD SSTLRIKSTW 300
301 VGESTISPSN ILSLEQLDEK LSTGSPTSYL STVQEIARSF YARRINDPEA TLLPTLSLLE 360
361 SLDDEKVKVD LNILDRTLGF VVINEIKRKV NSTVAEKIYT KLGDLALLRR QMQPIATKMA 420
421 SFRKKIQNFG YNFDTNTADE LIKGVLKIKD DDVRVGIEIL LFKTMPRARY FIAGKVDPDQ 480
481 YGHYALNLPI YTHFTAPMRR YADHVVHRQL KAVIHDTPYT EDMEALKITS EYCNFKKDCA 540
541 YQAQEQAIHL LLCKTINDMG NTTGQLLTMA TVLQVYESSF DVFIPEFGIE KRVHGDQLPL 600
601 IKAEFDGTNR VLELHWQPGV DSATFIPADE KNPKSYRNSI KNKFRSTAAE IANIELDKEA 660
661 ESEP
|
| Detection Method: | |
| Confidence: | 166.0 |
| Match: | 2id0A |
| Description: | No description for 2id0A was found. |
|
Region A: Residues: [1165-1250] |
1 11 21 31 41 51
| | | | | |
1 LISDPLSKEL SDLHLTVPNL RLPSASDNKQ NALEKFISTT ETRIENDNYI QEIHELQKIP 60
61 ILLRAEVGMA LPCLTVRALN PFMKRV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.386 | d.37.1 | CBS-domain |
| View | Download | 0.353 | a.138.1 | Multiheme cytochromes |
| View | Download | 0.293 | d.37.1 | CBS-domain |
| View | Download | 0.288 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.288 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.277 | a.204.1 | Description not found. |
| View | Download | 0.253 | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.253 | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.235 | a.42.1 | MDM2 |
