YRC Public Data Repository - Protein Structure Prediction

Protein:	NSE3
Organism:	Saccharomyces cerevisiae
Length:	303 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NSE3.

Description	E-value	Query Range	Subject Range
gi\|45184704, gi\|... - gi\|45184704\|ref\|NP_982422.1\| AAL120Cp [Ashbya gossypii ATCC 10895], gi\|44980050\|gb\|AAS50246.1\| AAL12... gi\|44980050 - gi\|44980050\|gb\|AAS50246.1\| AAL120Cp [Ashbya gossypii ATCC 10895]	182.0	[0..25]	[303..12]
gi\|49526155 - gi\|49526155\|emb\|CAG59777.1\| unnamed protein product [Candida glabrata] gi\|49526155, gi\|... - gi\|50288833\|ref\|XP_446846.1\| unnamed protein product [Candida glabrata], gi\|49526155\|emb\|CAG59777.1\|...	150.0	[0..23]	[302..16]
gi\|49642586 - gi\|49642586\|emb\|CAH00548.1\| KLLA0D08734p [Kluyveromyces lactis] gi\|50306953, gi\|... - gi\|50306953\|ref\|XP_453452.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642586\|emb\|CAH0054...	123.0	[0..1]	[301..1]
gi\|50427377, gi\|... - gi\|50427377\|ref\|XP_462301.1\| hypothetical protein DEHA0G18711g [Debaryomyces hansenii CBS767], gi\|49... gi\|49657971 - gi\|49657971\|emb\|CAG90807.1\| DEHA2G17534p [Debaryomyces hansenii]	66.0	[0..27]	[280..39]
gi\|46442293, gi\|... - gi\|68471296\|ref\|XP_720196.1\| hypothetical protein CaO19.10188 [Candida albicans SC5314], gi\|68470838... orf19.10188, orf... - orf19.2673 CGDID:CAL0003512 Assembly 19, Contig19-10158 (27943, 26924) CDS, reverse complemented, tr...	55.0	[0..27]	[286..56]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIDNDSDV DLTEDLAVAK IVKENPVARK MVRYILSRGE SQNSIITRNK LQSVIHEAAR  60
   61 EENIAKPSFS KMFMDINAIL YNVYGFELQG LPSKNNMNAG GNGSNSNTNK SMPEPLGHRA 120
  121 QKFILLNNV

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	1.67
Match:
Description:	No description for 1dgsA was found.

Predicted Domain #2

Region A:
Residues: [130-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHSKNFDDFK ILQSAHTYEE LIVTGEYIGD DIASGTSNTL ESKLSTDRDL VYKGVLSVIL  60
   61 CIVFFSKNNI LHQELIKFLE TFGIPSDGSK IAILNITIED LIKSLEKREY IVRLEEKSDT 120
  121 DGEVISYRIG RRTQAELGLE SLEKLVQEIM GLEKEQTKSL HDDIIKSIGD SYSI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits