YRC Public Data Repository - Protein Structure Prediction

Protein:	RNH202
Organism:	Saccharomyces cerevisiae
Length:	350 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNH202.

Description	E-value	Query Range	Subject Range
gi\|207346510 - gi\|207346510\|gb\|EDZ72987.1\| YDR279Wp-like protein [Saccharomyces cerevisiae AWRI1631] RNH2B_YEAST - Ribonuclease H2 subunit B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNH202 PE=1 SV... gi\|190404777 - gi\|190404777\|gb\|EDV08044.1\| hypothetical protein SCRG_00250 [Saccharomyces cerevisiae RM11-1a] gi\|151942252 - gi\|151942252\|gb\|EDN60608.1\| Rnh2B [Saccharomyces cerevisiae YJM789] RNH202 - Ribonuclease H2 subunit, required for RNase H2 activity; related to human AGS2 that causes Aicardi-G...	0.0	[1..350]	[1..350]

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Predicted Domain #1

Region A:
Residues: [1-350]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVSNIGGEE RLIILPDDYE TSKTINTFTL PPPSNITSKP RIELFENING KLYEIRSFQF  60
   61 GKGPSYSHEE DLANDKYHYT KENHPIKSTF IVNTSDPTDG YVFNSSKIHF CSLYDIAFSL 120
  121 IGFYYRNSVS ADEQDYSNSS DTGENQKSNS KTNEKFLTVR DYHDFLTDNH DKNWENISLS 180
  181 RLKSGLAKVS ETIEEAGDVY YKITSAMITQ FLLGKVSKIV ENFPPSIPTL KNAPTEIKQC 240
  241 YKVVMATNLL VSLIPRAAYH NLLTFSPTMD SGCLNPDIKA SFIELENYET TNELQNAERE 300
  301 LLMKSAMNVG LNSNGRVSLP VKKVTKKIVQ NKKPKVAIGK GAIDGFFKRK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits