YRC Public Data Repository - Protein Structure Prediction

Protein:	PMP3
Organism:	Saccharomyces cerevisiae
Length:	55 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMP3.

Description	E-value	Query Range	Subject Range
gi\|40745267, gi\|... - gi\|67523713\|ref\|XP_659916.1\| hypothetical protein AN2312.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	72.0	[0..10]	[55..10]
gi\|46121245, gi\|... - gi\|46121245\|ref\|XP_385177.1\| hypothetical protein FG05001.1 [Gibberella zeae PH-1], gi\|42551259\|gb\|E...	72.0	[0..1]	[54..1]
gi\|85108021 - gi\|85108021\|ref\|XP_962495.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32414287, gi\|... - gi\|32414287\|ref\|XP_327623.1\| predicted protein [Neurospora crassa], gi\|28924102\|gb\|EAA33259.1\| predi...	72.0	[0..16]	[54..97]
gi\|145009364, gi... - gi\|39949765\|ref\|XP_363224.1\| hypothetical protein MGG_08808 [Magnaporthe grisea 70-15], gb\|EAA51286....	70.0	[0..1]	[54..1]
gi\|70997695, gi\|... - gi\|70997695\|ref\|XP_753585.1\| stress response RCI peptide [Aspergillus fumigatus Af293], gi\|66851221\|... gi\|159126684 - gi\|159126684\|gb\|EDP51800.1\| stress response RCI peptide, putative [Aspergillus fumigatus A1163]	70.0	[0..10]	[54..10]
gi\|238506933, gi... - gi\|238506933\|ref\|XP_002384668.1\| stress response RCI peptide, putative [Aspergillus flavus NRRL3357]... gi\|83776210 - gi\|83776210\|dbj\|BAE66329.1\| unnamed protein product [Aspergillus oryzae] gi\|169786003 - gi\|169786003\|ref\|XP_001827462.1\| hypothetical protein [Aspergillus oryzae RIB40]	69.0	[0..1]	[54..1]
gi\|119183159, gi... - gi\|90301432\|gb\|EAS31063.1\| predicted protein [Coccidioides immitis RS], gi\|119183159\|ref\|XP_00124264...	69.0	[0..3]	[50..5]
gi\|125544049, gi... - gi\|125544049\|gb\|EAY90188.1\| hypothetical protein OsI_11752 [Oryza sativa Indica Group], gi\|125544046... gi\|113548671, gi... - gi\|34896280\|ref\|NP_909484.1\| putative low temperature and salt responsive protein [Oryza sativa], gi...	68.0	[0..3]	[53..12]
gi\|89043240, gi\|... - gi\|89071227\|ref\|ZP_01158408.1\| hypothetical protein OG2516_04613 [Oceanicola granulosus HTCC2516], g...	66.0	[0..6]	[55..3]
gi\|51244891, gi\|... - gi\|51244891\|ref\|YP_064775.1\| hypothetical protein DP1039 [Desulfotalea psychrophila LSv54], gi\|50875...	66.0	[0..3]	[55..7]

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Predicted Domain #1

Region A:
Residues: [1-55]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSAKIINII LSLFLPPVAV FLARGWGTDC IVDIILTILA WFPGMLYALY IVLQD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.040959
Match:	PF01679.8
Description:	No description for PF01679.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.813	N/A	N/A	a.60.1	SAM/Pointed domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits