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View Structure Prediction Details

Protein: YDR261W-A
Organism: Saccharomyces cerevisiae
Length: 438 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR261W-A.

Description E-value Query
Range
Subject
Range
YGR161C-D - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
YG13B_YEAST - Transposon Ty1-GR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
543.0 [0..1] [431..1]

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Predicted Domain #1
Region A:
Residues: [1-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLHQNP HSLHGSAAAS VTSKEVPSNQ DPLAVSASNL PEFDRDSTKV NSQQETTPGT  60
   61 SAVPENHHHV SPQPASVPPP QNGQYQQHGM MTPNKAMASN WAHYQQPSMM TCSHYQTSPA 120
  121 YYQPDPHYPL PQYIPPLSTS SPDPIDSQNQ HSEVPQAKTK VRNNVLPPHT LTSEENF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 75.853872
Match: PF01021.10
Description: No description for PF01021.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [178-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STWVKFYIRF LKNSNLGDII PNDQGEIKRQ MTYEEHAYIY NTFQAFAPFH LLPTWVKQIL  60
   61 EINYADILTV LCKSVSKMQT NNQELKDWIA LANLEYDGST SADTFEITVS TIIQRLKENN 120
  121 INVSDRLACQ LILKGLSGDF KYLRNQYRTK 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.415 d.169.1 C-type lectin-like
View Download 0.406 a.78.1 Fatty acid responsive transcription factor FadR, C-terminal domain
View Download 0.397 c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.387 a.1.1 Globin-like
View Download 0.335 a.118.8 TPR-like

Predicted Domain #3
Region A:
Residues: [328-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNMKLSQLFA EIQLIYDENK IMNLNKPSQY KQHSEYKNVS RTSPNTTNTK VTSRNYHRTN  60
   61 SSKPRAAKAH NIATSSKFSR VNNDHINEST VSSQYLSDDN ELSLRPATER I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle