YRC Public Data Repository - Protein Structure Prediction

Protein:	BTT1
Organism:	Saccharomyces cerevisiae
Length:	149 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BTT1.

Description	E-value	Query Range	Subject Range
gi\|109475294 - gi\|109475294\|ref\|XP_345562.3\| PREDICTED: similar to basic transcription factor 3-like 4 [Rattus norv...	237.0	[0..3]	[133..125]
gi\|61820463 - gi\|61820463\|ref\|XP_589191.1\| PREDICTED: similar to basic transcription factor 3-like 4 [Bos taurus]	234.0	[0..3]	[133..95]
gi\|89268303 - gi\|89268303\|emb\|CAJ82851.1\| basic transcription factor 3 [Xenopus tropicalis]	233.0	[0..3]	[128..53]
gi\|50795963 - gi\|50795963\|ref\|XP_423823.1\| PREDICTED: similar to Transcription factor BTF3 (RNA polymerase B trans...	231.0	[0..3]	[131..54]
BTF3_MOUSE - Transcription factor BTF3 OS=Mus musculus GN=Btf3 PE=1 SV=3	227.0	[0..3]	[128..48]
gi\|109077564 - gi\|109077564\|ref\|XP_001100404.1\| PREDICTED: basic transcription factor 3 isoform 2 [Macaca mulatta]	224.0	[0..3]	[128..50]
gi\|208965864 - gi\|208965864\|dbj\|BAG72946.1\| basic transcription factor 3 [synthetic construct] BTF3 - basic transcription factor 3 gi\|55624114 - gi\|55624114\|ref\|XP_517710.1\| PREDICTED: basic transcription factor 3 isoform 3 [Pan troglodytes]	223.0	[0..3]	[128..50]
gi\|68393035, gi\|... - gi\|68393035\|ref\|XP_706886.1\| PREDICTED: similar to basic transcription factor 3 isoform 2 [Danio rer...	223.0	[0..3]	[128..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVDQEKLAK LHKLSAANKV GGTRRKINKK GNLYNNNDKD NTKLQAELHK LHPMTIENVA  60
   61 EANFFKKNGK VLHFNSAVVQ IAPQCNLTMI HGQPKENTLN GLYPSVASQL GSQELEYLTG 120
  121 LAHNLENEQT VLDQLGDRCS ETKQQVMNS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.366532
Match:	PF01849.9
Description:	No description for PF01849.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits