| Protein: | PRP28 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 588 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP28.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [5..576] | [10..579] |
|
|
0.0 | [5..576] | [10..579] |
|
|
0.0 | [5..576] | [10..579] |
|
|
0.0 | [5..576] | [10..620] |
|
|
0.0 | [5..576] | [10..620] |
|
|
0.0 | [6..583] | [11..579] |
|
Region A: Residues: [1-139] |
1 11 21 31 41 51
| | | | | |
1 MARPIDVSQL IAGINKKKGL DENTSGKISK PRFLNKQERS KQERLKENEE SLTPTQSDSA 60
61 KVEIKKVNSR DDSFFNETND KKRNPSKQNG SKFHFSWNES EDTLSGYDPI VSTRAIDLLW 120
121 KGKTPKNAAE SSYMGKHWT
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.377 | a.1.1 | Globin-like |
| View | Download | 0.551 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.334 | a.24.3 | Cytochromes |
| View | Download | 0.285 | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.551 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.377 | a.1.1 | Globin-like |
| View | Download | 0.334 | a.24.3 | Cytochromes |
| View | Download | 0.308 | a.24.3 | Cytochromes |
| View | Download | 0.285 | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.272 | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.249 | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.222 | a.3.1 | Cytochrome c |
|
Region A: Residues: [140-402] |
1 11 21 31 41 51
| | | | | |
1 EKSLHEMNER DWRILKEDYA IVTKGGTVEN PLRNWEELNI IPRDLLRVII QELRFPSPTP 60
61 IQRITIPNVC NMKQYRDFLG VASTGSGKTL AFVIPILIKM SRSPPRPPSL KIIDGPKALI 120
121 LAPTRELVQQ IQKETQKVTK IWSKESNYDC KVISIVGGHS LEEISFSLSE GCDILVATPG 180
181 RLIDSLENHL LVMKQVETLV LDEADKMIDL GFEDQVTNIL TKVDINADSA VNRQTLMFTA 240
241 TMTPVIEKIA AGYMQKPVYA TIG
|
| Detection Method: | |
| Confidence: | 503.0 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [403-588] |
1 11 21 31 41 51
| | | | | |
1 VETGSEPLIQ QVVEYADNDE DKFKKLKPIV AKYDPPIIIF INYKQTADWL AEKFQKETNM 60
61 KVTILHGSKS QEQREHSLQL FRTNKVQIMI ATNVAARGLD IPNVSLVVNF QISKKMDDYI 120
121 HRIGRTGRAA NEGTAVSFVS AAEDESLIRE LYKYVRKHDP LNSNIFSEAV KNKYNVGKQL 180
181 SNEIIY
|
| Detection Method: | |
| Confidence: | 503.0 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
