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View Structure Prediction Details

Protein: SNU56
Organism: Saccharomyces cerevisiae
Length: 492 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNU56.

Description E-value Query
Range
Subject
Range
gi|207346547 - gi|207346547|gb|EDZ73017.1| YDR240Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190404810 - gi|190404810|gb|EDV08077.1| hypothetical protein SCRG_00285 [Saccharomyces cerevisiae RM11-1a]
SNU56_YEAST - 56 kDa U1 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae (strain ATCC 204508 ...
SNU56 - Component of U1 snRNP required for mRNA splicing via spliceosome; yeast specific, no metazoan counte...
0.0 [1..492] [1..492]

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Predicted Domain #1
Region A:
Residues: [1-492]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPRRRGLAY HHTKPKGQLS QGHYPTTSND GQRRKVGNSE AFQSFDIWKN LDRIRSTKKN  60
   61 AGQFIKGSLL ILPMRTEDKQ QFDECMDELH KYISKDILRC YPQKEQKDEG MLFYIVLKDF 120
  121 NILDSCFVLS VLLAFQKRLW MAPSEKSYFR VPKNINLTGS FYLPKNIETG RGHIITSYRR 180
  181 EQPSSSIVEV GFNVVPDFQQ FQVKACHVSK FMNELSNFFS QVEFGKCEAN VINYFKREYN 240
  241 RTYSQISLAL YELPLIGDGL FDIKSYISKT RPIIETSKAQ MIKHISEMKA YNEISGLQGD 300
  301 QFPRQQRPLS NSPSSNSISS SQTIEAGATS YQTQPQRHAV NKPSNVLNSS NRHSGPKTFE 360
  361 DGRYSEGNKP GFMTQDEIKQ HCIGTIKASM DAVKKKSSYQ ILKTYVRCPR QNYIDIVYQN 420
  421 LNDLRSKTNC NIVVLNLNNL HESQMWLESL NTTNYTIFAQ APHPSTIRVI SIGGVGEYIV 480
  481 KALELILNIL EH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle