| Protein: | SPR28 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 423 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPR28.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [10..400] | [71..416] |
|
|
0.0 | [10..400] | [123..476] |
|
|
0.0 | [1..423] | [1..379] |
|
|
0.0 | [2..418] | [115..484] |
|
|
0.0 | [10..400] | [32..377] |
|
Region A: Residues: [1-246] |
1 11 21 31 41 51
| | | | | |
1 MFPMKDHSAL EQHTLSRDEL RRRKGYKKGL QLSILLLGEK GSGKSTFLNN LCGQDISLSD 60
61 GDYDDDDDKV TNNVTPENGN AIEDIDPGYK TAHLSPGLKL VTRRVYLNDE LGVPITLDII 120
121 LFPGCGDNVD NSQSSVVIKN YLDQQFANVL KEEVRIKRNT KETDGRPHVC LYFLKSTPRG 180
181 VKKFDIELMK TICDKVNLIP IIPKADGLTE TELNLHKDIV RQEISQNNIR VFDFKSDTLG 240
241 ETLALY
|
| Detection Method: |  |
| Confidence: | 10.79 |
| Match: | 1egaA |
| Description: | GTPase Era, N-terminal domain; GTPase Era C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [247-351] |
1 11 21 31 41 51
| | | | | |
1 DMDIDSSSAK SKYDNDTKIK EISPFAIVCS KTFNKNSENR VEHIRTYEWG SLVVEDQNTS 60
61 DFIYLKAILL GSHLQELKDV TNNVLYENYR AKVLTEKKNN YDIPN
|
| Detection Method: | |
| Confidence: | 10.79 |
| Match: | 1egaA |
| Description: | GTPase Era, N-terminal domain; GTPase Era C-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [352-423] |
1 11 21 31 41 51
| | | | | |
1 YSYIDETSRG SVSNVSTRRN SASRTLGNPD TNDENAYQIH KEIDEKNRII EDYQRKIDLL 60
61 EKMLAAPHQN KV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.406 | 0.016 | structural constituent of cytoskeleton | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.401 | 0.013 | structural constituent of cytoskeleton | a.144.1 | PABC (PABP) domain |
| View | Download | 0.432 | 0.009 | structural constituent of cytoskeleton | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.477 | 0.003 | structural constituent of cytoskeleton | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.380 | 0.002 | structural constituent of cytoskeleton | a.46.1 | Methionine synthase domain |
| View | Download | 0.295 | N/A | N/A | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.258 | N/A | N/A | a.156.1 | S13-like H2TH domain |
| View | Download | 0.255 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.254 | N/A | N/A | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.251 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.248 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.246 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.238 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.219 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.212 | N/A | N/A | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.211 | N/A | N/A | a.5.2 | UBA-like |
| View | Download | 0.206 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.200 | N/A | N/A | a.3.1 | Cytochrome c |
