YRC Public Data Repository - Protein Structure Prediction

Protein:	YDR210W
Organism:	Saccharomyces cerevisiae
Length:	75 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR210W.

Description	E-value	Query Range	Subject Range
gi\|7493792, gi\|3... - pir\|\|T18240 hypothetical transmembrane protein - yeast (Candida albicans), gi\|3859674\|emb\|CAA22011.1...	63.0	[0..4]	[50..97]
gi\|54640687, gi\|... - gi\|54640687\|gb\|EAL29438.1\| GA19745-PA [Drosophila pseudoobscura], gi\|125979345\|ref\|XP_001353705.1\| G...	60.0	[0..5]	[52..407]
gi\|49648437 - gi\|49648437\|emb\|CAG80757.1\| YALI0D08338p [Yarrowia lipolytica] gi\|50550193, gi\|... - gi\|50550193\|ref\|XP_502569.1\| YALI0D08338p [Yarrowia lipolytica], gi\|49648437\|emb\|CAG80757.1\| unnamed...	50.0	[0..5]	[42..58]
gi\|115903652, gi... - gi\|115972944\|ref\|XP_001188944.1\| PREDICTED: similar to Brg1 [Strongylocentrotus purpuratus], gi\|1159...	48.0	[0..4]	[52..221]
gi\|14029167 - gi\|14029167\|gb\|AAK51159.1\| Bc-hch [Botryotinia fuckeliana]	47.0	[0..3]	[48..684]
pfs-2 - six WD40 repeats status:Partially_confirmed UniProt:Q9NAN8 protein_id:CAB76722.1	47.0	[0..1]	[53..624]
gi\|53762154, gi\|... - gi\|73539397\|ref\|YP_299764.1\| surface antigen protein [Ralstonia eutropha JMP134], gi\|72122734\|gb\|AAZ...	46.0	[0..4]	[52..48]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQQGYYQQ GPPQQGYYQQ GPPQQGYYQQ GPPQQGYPQQ QPVYVQQGQP KEESCLDSCL  60
   61 KCLCCCFLLE LVCDN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits