| Protein: | REF2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 533 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for REF2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..533] | [1..533] |
|
|
0.007 | [184..365] | [612..813] |
|
|
0.009 | [128..373] | [542..772] |
|
Region A: Residues: [1-465] |
1 11 21 31 41 51
| | | | | |
1 MSAPVPQLVN ISHALQASTI QQIRLDMVDF NKDCKLSSIQ LARIDKYIDS LQAALNQFTK 60
61 DNLHIERKEK NVTEADIQLY SGLKSMYLDY LNQLIKLKHE KQHHSTPPIA NDVSLDFFVN 120
121 QLPKFSPEER KNYIDNLILN KNSHNRLSKM DGLVDAVINL CVLDTSVAEN VRSYMKLLDT 180
181 LGFQKGSNST GTKANLKKKL ASSKAKIKDS EKEKEKEKDK SKVKMKTKLK PSPLLNNDDK 240
241 NSSPSPTAST SSMKKLKSGL FNKNEAKSTE SLPTSSKKKL SFSKYLNKDD ADMTKLGTKR 300
301 SIDVDFKVNP EASTVASNII SSSTSGSSTT TVATPASSEE PLKKKTKISV QDSNVQSILR 360
361 NGKPKKARIS SIKFLDDSQL IKVYGDDLPN QGLQVSPTQL KKILKPFKEG EPKEIILFED 420
421 MSIKLKPLDL MFLKNTNSDD YMDISETKGG PIHCETRTPL IYRKN
|
| Detection Method: |  |
| Confidence: | 7.0 |
| Match: | 1iwpA |
| Description: | Diol dehydratase, alpha subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [466-533] |
1 11 21 31 41 51
| | | | | |
1 FNHFNPDLNK RPPREPIEFD LNGNTNSTPT IAKAFGKNSL LLRKDRGGLP YKHVPIVKRN 60
61 KYPPRPVH
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.713 | d.58.17 | Metal-binding domain |
| View | Download | 0.661 | b.84.1 | Single hybrid motif |
| View | Download | 0.667 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.707 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.650 | d.58.17 | Metal-binding domain |
| View | Download | 0.646 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.616 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.610 | b.40.6 | MOP-like |
| View | Download | 0.608 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.604 | g.28.1 | Thyroglobulin type-1 domain |
| View | Download | 0.603 | d.9.2 | Description not found. |
| View | Download | 0.572 | d.9.2 | Description not found. |
| View | Download | 0.572 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.572 | b.84.1 | Single hybrid motif |
| View | Download | 0.569 | g.5.1 | Midkine |
| View | Download | 0.563 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.562 | d.9.2 | Description not found. |
| View | Download | 0.549 | d.93.1 | SH2 domain |
| View | Download | 0.536 | g.41.8 | Zn-binding ribosomal proteins |
| View | Download | 0.524 | b.84.1 | Single hybrid motif |
| View | Download | 0.522 | d.17.1 | Cystatin/monellin |
| View | Download | 0.507 | d.58.49 | YajQ-like |
| View | Download | 0.500 | b.40.6 | MOP-like |
| View | Download | 0.496 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.471 | b.1.2 | Fibronectin type III |
| View | Download | 0.468 | d.58.17 | Metal-binding domain |
| View | Download | 0.450 | d.58.17 | Metal-binding domain |
| View | Download | 0.448 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.414 | d.17.3 | Disulfide bond isomerase, DsbC, N-terminal domain |
| View | Download | 0.370 | b.114.1 | N-utilization substance G protein NusG, insert domain |
| View | Download | 0.355 | b.1.20 | Tp47 lipoprotein, middle and C-terminal domains |
| View | Download | 0.315 | b.1.1 | Immunoglobulin |
| View | Download | 0.285 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.284 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.273 | d.237.1 | Hypothetical protein YjiA, C-terminal domain |
| View | Download | 0.270 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.263 | d.59.1 | Ribosomal protein L30p/L7e |
| View | Download | 0.249 | d.93.1 | SH2 domain |
| View | Download | 0.248 | d.68.4 | YhbY-like |
| View | Download | 0.247 | d.204.1 | Ribosome binding protein Y (YfiA homologue) |
| View | Download | 0.233 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.212 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.211 | b.40.2 | Bacterial enterotoxins |
|
Region A: Residues: [335-533] |
1 11 21 31 41 51
| | | | | |
1 PASSEEPLKK KTKISVQDSN VQSILRNGKP KKARISSIKF LDDSQLIKVY GDDLPNQGLQ 60
61 VSPTQLKKIL KPFKEGEPKE IILFEDMSIK LKPLDLMFLK NTNSDDYMDI SETKGGPIHC 120
121 ETRTPLIYRK NFNHFNPDLN KRPPREPIEF DLNGNTNSTP TIAKAFGKNS LLLRKDRGGL 180
181 PYKHVPIVKR NKYPPRPVH
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
